miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33266 5' -58.1 NC_007605.1 + 52446 0.68 0.724572
Target:  5'- cGUCGUUGCU-GCCgcgggUGGUUgagggcaugccccCCCUCCCg -3'
miRNA:   3'- uCGGUAACGGuCGG-----ACCAA-------------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 123358 0.68 0.725546
Target:  5'- uAGCCGgugcacaGCCcuguGCCUGGccCUCUCCCc -3'
miRNA:   3'- -UCGGUaa-----CGGu---CGGACCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 39955 0.68 0.72652
Target:  5'- cGCCuggAUUGCCGGCugggggCUGGggucccgggacgccCCCUCCCu -3'
miRNA:   3'- uCGG---UAACGGUCG------GACCaa------------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 117564 0.68 0.735246
Target:  5'- uGGCCAUUGCCucaaucauuggGGaauCCUGcc-CCCUCCCc -3'
miRNA:   3'- -UCGGUAACGG-----------UC---GGACcaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 22606 0.68 0.735246
Target:  5'- gGGuCCAUcagGCCGGCCggagGGacCCCggcggCCCg -3'
miRNA:   3'- -UC-GGUAa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 34071 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 31002 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 27933 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 13399 0.68 0.735246
Target:  5'- gGGuCCAUcagGCCGGCCggagGGacCCCggcggCCCg -3'
miRNA:   3'- -UC-GGUAa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 16468 0.68 0.735246
Target:  5'- gGGuCCAUcagGCCGGCCggagGGacCCCggcggCCCg -3'
miRNA:   3'- -UC-GGUAa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 19537 0.68 0.735246
Target:  5'- gGGuCCAUcagGCCGGCCggagGGacCCCggcggCCCg -3'
miRNA:   3'- -UC-GGUAa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 25675 0.68 0.735246
Target:  5'- gGGuCCAUcagGCCGGCCggagGGacCCCggcggCCCg -3'
miRNA:   3'- -UC-GGUAa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 28744 0.68 0.735246
Target:  5'- gGGuCCAUcagGCCGGCCggagGGacCCCggcggCCCg -3'
miRNA:   3'- -UC-GGUAa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 31813 0.68 0.735246
Target:  5'- gGGuCCAUcagGCCGGCCggagGGacCCCggcggCCCg -3'
miRNA:   3'- -UC-GGUAa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 34882 0.68 0.735246
Target:  5'- gGGuCCAUcagGCCGGCCggagGGacCCCggcggCCCg -3'
miRNA:   3'- -UC-GGUAa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 12588 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 15657 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 18726 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 21795 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 24864 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.