miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33266 5' -58.1 NC_007605.1 + 54096 0.67 0.803732
Target:  5'- aAGCCc---CCgacgaugaacuccggAGCCUGcUUCCCUCCCg -3'
miRNA:   3'- -UCGGuaacGG---------------UCGGACcAAGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 13286 0.67 0.800211
Target:  5'- gGGuCCAccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UC-GGUaa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 33557 0.67 0.800211
Target:  5'- uGCCAcc-CCAGCCUccccCCCUCCCc -3'
miRNA:   3'- uCGGUaacGGUCGGAccaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 31700 0.67 0.800211
Target:  5'- gGGuCCAccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UC-GGUaa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 16355 0.67 0.800211
Target:  5'- gGGuCCAccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UC-GGUaa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 19424 0.67 0.800211
Target:  5'- gGGuCCAccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UC-GGUaa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 22493 0.67 0.800211
Target:  5'- gGGuCCAccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UC-GGUaa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 25562 0.67 0.800211
Target:  5'- gGGuCCAccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UC-GGUaa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 28631 0.67 0.800211
Target:  5'- gGGuCCAccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UC-GGUaa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 30488 0.67 0.800211
Target:  5'- uGCCAcc-CCAGCCUccccCCCUCCCc -3'
miRNA:   3'- uCGGUaacGGUCGGAccaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 27419 0.67 0.800211
Target:  5'- uGCCAcc-CCAGCCUccccCCCUCCCc -3'
miRNA:   3'- uCGGUaacGGUCGGAccaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 24350 0.67 0.800211
Target:  5'- uGCCAcc-CCAGCCUccccCCCUCCCc -3'
miRNA:   3'- uCGGUaacGGUCGGAccaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 58244 0.67 0.800211
Target:  5'- cGGCCuccgcgGCCccGGCCUccagCCCUCCCc -3'
miRNA:   3'- -UCGGuaa---CGG--UCGGAccaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 151934 0.67 0.800211
Target:  5'- cGGCCGUgUGCauGCCuuUGGUggggCCUUCCCu -3'
miRNA:   3'- -UCGGUA-ACGguCGG--ACCAa---GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 129684 0.67 0.800211
Target:  5'- cAGCCAUUGCCAGUCUca--CCCacagcaugaCCCa -3'
miRNA:   3'- -UCGGUAACGGUCGGAccaaGGGa--------GGG- -5'
33266 5' -58.1 NC_007605.1 + 160 0.67 0.800211
Target:  5'- cGCCA---CCGGCUUGG--CCCUCUCa -3'
miRNA:   3'- uCGGUaacGGUCGGACCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 12074 0.67 0.800211
Target:  5'- uGCCAcc-CCAGCCUccccCCCUCCCc -3'
miRNA:   3'- uCGGUaacGGUCGGAccaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 15143 0.67 0.800211
Target:  5'- uGCCAcc-CCAGCCUccccCCCUCCCc -3'
miRNA:   3'- uCGGUaacGGUCGGAccaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 18212 0.67 0.800211
Target:  5'- uGCCAcc-CCAGCCUccccCCCUCCCc -3'
miRNA:   3'- uCGGUaacGGUCGGAccaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 21281 0.67 0.800211
Target:  5'- uGCCAcc-CCAGCCUccccCCCUCCCc -3'
miRNA:   3'- uCGGUaacGGUCGGAccaaGGGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.