miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33266 5' -58.1 NC_007605.1 + 22424 0.66 0.842357
Target:  5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3'
miRNA:   3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 19355 0.66 0.842357
Target:  5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3'
miRNA:   3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 159675 0.66 0.842357
Target:  5'- gAGCCcg-GCCcGUCcGGcgCCCUCUCg -3'
miRNA:   3'- -UCGGuaaCGGuCGGaCCaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 64854 0.66 0.841557
Target:  5'- cGCCccaggUGCCuauagagGGCCUGGgUCaCgUCCCa -3'
miRNA:   3'- uCGGua---ACGG-------UCGGACCaAG-GgAGGG- -5'
33266 5' -58.1 NC_007605.1 + 101348 0.66 0.841557
Target:  5'- cGCCGggGCCGcauucccugcaucGUCUGcGUgggCUCUCCCa -3'
miRNA:   3'- uCGGUaaCGGU-------------CGGAC-CAa--GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 2857 0.66 0.834271
Target:  5'- gGGCCggUGgCGGUCUGGUaguaCCagCCCa -3'
miRNA:   3'- -UCGGuaACgGUCGGACCAag--GGa-GGG- -5'
33266 5' -58.1 NC_007605.1 + 53574 0.66 0.834271
Target:  5'- uGCCAgggGCCuggcGCUUGGggCCucggcuggCUCCCa -3'
miRNA:   3'- uCGGUaa-CGGu---CGGACCaaGG--------GAGGG- -5'
33266 5' -58.1 NC_007605.1 + 61065 0.66 0.817569
Target:  5'- gGGCCccu-CCGauGCCUGGgagUCCC-CCCa -3'
miRNA:   3'- -UCGGuaacGGU--CGGACCa--AGGGaGGG- -5'
33266 5' -58.1 NC_007605.1 + 22946 0.66 0.817569
Target:  5'- gAGCCccuUUGCCccCCUGGcggCCCagCCCg -3'
miRNA:   3'- -UCGGu--AACGGucGGACCaa-GGGa-GGG- -5'
33266 5' -58.1 NC_007605.1 + 164021 0.66 0.817569
Target:  5'- uAGCCGguccCCAGUgUGGccaCCUCCCu -3'
miRNA:   3'- -UCGGUaac-GGUCGgACCaagGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 34477 0.66 0.817569
Target:  5'- gGGUCccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UCGGuaa-CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 31408 0.66 0.817569
Target:  5'- gGGUCccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UCGGuaa-CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 12994 0.66 0.817569
Target:  5'- gGGUCccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UCGGuaa-CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 16063 0.66 0.817569
Target:  5'- gGGUCccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UCGGuaa-CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 19132 0.66 0.817569
Target:  5'- gGGUCccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UCGGuaa-CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 22201 0.66 0.817569
Target:  5'- gGGUCccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UCGGuaa-CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 25270 0.66 0.817569
Target:  5'- gGGUCccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UCGGuaa-CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 28339 0.66 0.817569
Target:  5'- gGGUCccagGCCAGCCggagGGacCCCggcagCCCg -3'
miRNA:   3'- -UCGGuaa-CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 106664 0.66 0.808968
Target:  5'- aGGCC--UGCCAGCCgccgcuuggaGGcUCCCUggagCCCc -3'
miRNA:   3'- -UCGGuaACGGUCGGa---------CCaAGGGA----GGG- -5'
33266 5' -58.1 NC_007605.1 + 114401 0.66 0.808968
Target:  5'- uAGCCAccgugGCCAgGCCcgaGGUUCUCUUCa -3'
miRNA:   3'- -UCGGUaa---CGGU-CGGa--CCAAGGGAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.