miRNA display CGI


Results 61 - 80 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33266 5' -58.1 NC_007605.1 + 21281 0.67 0.800211
Target:  5'- uGCCAcc-CCAGCCUccccCCCUCCCc -3'
miRNA:   3'- uCGGUaacGGUCGGAccaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 30488 0.67 0.800211
Target:  5'- uGCCAcc-CCAGCCUccccCCCUCCCc -3'
miRNA:   3'- uCGGUaacGGUCGGAccaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 33557 0.67 0.800211
Target:  5'- uGCCAcc-CCAGCCUccccCCCUCCCc -3'
miRNA:   3'- uCGGUaacGGUCGGAccaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 40525 0.67 0.800211
Target:  5'- -aCCAggGuCCGGCCUGGgagcgcaCCC-CCCa -3'
miRNA:   3'- ucGGUaaC-GGUCGGACCaa-----GGGaGGG- -5'
33266 5' -58.1 NC_007605.1 + 126085 0.67 0.799328
Target:  5'- gGGCCcggacCCGGCCcggagacUGGUggCCCUCCUg -3'
miRNA:   3'- -UCGGuaac-GGUCGG-------ACCAa-GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 164284 0.67 0.791306
Target:  5'- cAGCCAgaGCCAGCCgGG-UCCgUgCg -3'
miRNA:   3'- -UCGGUaaCGGUCGGaCCaAGGgAgGg -5'
33266 5' -58.1 NC_007605.1 + 40404 0.67 0.787705
Target:  5'- uGCCAUggggacccccUGCCAGUCggcgcggGGUcccaggaccacgcCCCUCCCu -3'
miRNA:   3'- uCGGUA----------ACGGUCGGa------CCAa------------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 51265 0.67 0.782262
Target:  5'- aGGCCAUgGCCcaaAGauucCCUGGagcUCCUUCCCc -3'
miRNA:   3'- -UCGGUAaCGG---UC----GGACCa--AGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 159508 0.67 0.771236
Target:  5'- uGCCccaGCCGGCCgGGgcaccuccgggCUCUCCCg -3'
miRNA:   3'- uCGGuaaCGGUCGGaCCaa---------GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 121559 0.67 0.763788
Target:  5'- uAGUCAUaccUGCCAGguauguCCUGGggUCCCgaagcagcgUCCCa -3'
miRNA:   3'- -UCGGUA---ACGGUC------GGACCa-AGGG---------AGGG- -5'
33266 5' -58.1 NC_007605.1 + 52336 0.67 0.763788
Target:  5'- cGGCCAgagGgCGGCUcgGGUauccaUCuCCUCCCa -3'
miRNA:   3'- -UCGGUaa-CgGUCGGa-CCA-----AG-GGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 155197 0.68 0.744859
Target:  5'- cAGCCucGUUGgUGGCCgugGGgaagCCCUCCUc -3'
miRNA:   3'- -UCGG--UAACgGUCGGa--CCaa--GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 18726 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 34071 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 27933 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 34882 0.68 0.735246
Target:  5'- gGGuCCAUcagGCCGGCCggagGGacCCCggcggCCCg -3'
miRNA:   3'- -UC-GGUAa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 15657 0.68 0.735246
Target:  5'- cGCCuccucgggGCCAGCUgccggGGggCCCUgCCu -3'
miRNA:   3'- uCGGuaa-----CGGUCGGa----CCaaGGGAgGG- -5'
33266 5' -58.1 NC_007605.1 + 31813 0.68 0.735246
Target:  5'- gGGuCCAUcagGCCGGCCggagGGacCCCggcggCCCg -3'
miRNA:   3'- -UC-GGUAa--CGGUCGGa---CCaaGGGa----GGG- -5'
33266 5' -58.1 NC_007605.1 + 117564 0.68 0.735246
Target:  5'- uGGCCAUUGCCucaaucauuggGGaauCCUGcc-CCCUCCCc -3'
miRNA:   3'- -UCGGUAACGG-----------UC---GGACcaaGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 164444 0.68 0.735246
Target:  5'- gGGCCcugGCCAGCCUGacugaCUUCCUg -3'
miRNA:   3'- -UCGGuaaCGGUCGGACcaag-GGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.