miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33267 3' -55.7 NC_007605.1 + 164394 0.68 0.87117
Target:  5'- gGUCAUCCagguaGUuuCGCACCGCAAaCAc -3'
miRNA:   3'- -CGGUAGGgg---CGuuGCGUGGCGUUaGU- -5'
33267 3' -55.7 NC_007605.1 + 60164 0.67 0.878377
Target:  5'- uUCAUCCCCGCAcccagGCGgCuuCCGCAGg-- -3'
miRNA:   3'- cGGUAGGGGCGU-----UGC-Gu-GGCGUUagu -5'
33267 3' -55.7 NC_007605.1 + 5278 0.67 0.885366
Target:  5'- -gCAUCCCgGCGAC-CACCaGCucuGUCAu -3'
miRNA:   3'- cgGUAGGGgCGUUGcGUGG-CGu--UAGU- -5'
33267 3' -55.7 NC_007605.1 + 54620 0.67 0.891466
Target:  5'- uGCCAUCCguucggcccUCGCGcagACGCGCCaggcccuGCAGUCc -3'
miRNA:   3'- -CGGUAGG---------GGCGU---UGCGUGG-------CGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 13623 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 19761 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 22830 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 28967 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 32036 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 25899 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 40498 0.67 0.892133
Target:  5'- cCCAcCCCCGCcgggccccugGugGCucgGCCGCGGUCc -3'
miRNA:   3'- cGGUaGGGGCG----------UugCG---UGGCGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 35105 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 16692 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 166390 0.67 0.904985
Target:  5'- cGUCAUUCCCGU--CGUGuuGCAAUCc -3'
miRNA:   3'- -CGGUAGGGGCGuuGCGUggCGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 135377 0.67 0.904985
Target:  5'- aGCuCGUCCUCGCGcagaGCGCAaaGCGGcCAg -3'
miRNA:   3'- -CG-GUAGGGGCGU----UGCGUggCGUUaGU- -5'
33267 3' -55.7 NC_007605.1 + 66550 0.67 0.904985
Target:  5'- aCCggCCCCGCAACcuGCGCCGg----- -3'
miRNA:   3'- cGGuaGGGGCGUUG--CGUGGCguuagu -5'
33267 3' -55.7 NC_007605.1 + 153998 0.66 0.916909
Target:  5'- uGCgG-CCCUGCAGCGuCACCGUc-UCGg -3'
miRNA:   3'- -CGgUaGGGGCGUUGC-GUGGCGuuAGU- -5'
33267 3' -55.7 NC_007605.1 + 148764 0.66 0.916909
Target:  5'- uGCCGcUCCCCGCAuuccugcuuucgGCGCcCCuGCGgAUCc -3'
miRNA:   3'- -CGGU-AGGGGCGU------------UGCGuGG-CGU-UAGu -5'
33267 3' -55.7 NC_007605.1 + 52605 0.66 0.922518
Target:  5'- cGCCGccUCaCCCGCcacCGCAUCGcCGGUCc -3'
miRNA:   3'- -CGGU--AG-GGGCGuu-GCGUGGC-GUUAGu -5'
33267 3' -55.7 NC_007605.1 + 56166 0.66 0.927889
Target:  5'- cGCCGUacaCCUGCGcACGUgcaggGCCGCAuUCu -3'
miRNA:   3'- -CGGUAg--GGGCGU-UGCG-----UGGCGUuAGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.