miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33267 3' -55.7 NC_007605.1 + 4408 1.1 0.002726
Target:  5'- uGCCAUCCCCGCAACGCACCGCAAUCAg -3'
miRNA:   3'- -CGGUAGGGGCGUUGCGUGGCGUUAGU- -5'
33267 3' -55.7 NC_007605.1 + 108249 0.73 0.570216
Target:  5'- aCCAUCaCCCGCAccCGCACCcCAGUCc -3'
miRNA:   3'- cGGUAG-GGGCGUu-GCGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 63528 0.72 0.620893
Target:  5'- gGCCAUCCCuCGCA--GCACCGuCAAg-- -3'
miRNA:   3'- -CGGUAGGG-GCGUugCGUGGC-GUUagu -5'
33267 3' -55.7 NC_007605.1 + 63653 0.72 0.631083
Target:  5'- aGCCGUgCCCCGCcgauGCGCGCCuCuauGUCGc -3'
miRNA:   3'- -CGGUA-GGGGCGu---UGCGUGGcGu--UAGU- -5'
33267 3' -55.7 NC_007605.1 + 155540 0.71 0.671771
Target:  5'- cGCCAUcCCCCGCcuccaGCACCGgGAcUCGu -3'
miRNA:   3'- -CGGUA-GGGGCGuug--CGUGGCgUU-AGU- -5'
33267 3' -55.7 NC_007605.1 + 54713 0.7 0.731661
Target:  5'- cGCCAcCCCCGCGGC-UACCGCc---- -3'
miRNA:   3'- -CGGUaGGGGCGUUGcGUGGCGuuagu -5'
33267 3' -55.7 NC_007605.1 + 63249 0.7 0.731661
Target:  5'- gGCCAgcagCCCUGC-GCGCcagacggccGCCGCAcUCAg -3'
miRNA:   3'- -CGGUa---GGGGCGuUGCG---------UGGCGUuAGU- -5'
33267 3' -55.7 NC_007605.1 + 171410 0.7 0.769997
Target:  5'- cCCgAUCCCCGgAACGUccGCCGCcAUCc -3'
miRNA:   3'- cGG-UAGGGGCgUUGCG--UGGCGuUAGu -5'
33267 3' -55.7 NC_007605.1 + 170350 0.7 0.769997
Target:  5'- cCCgAUCCCCGgAACGUccGCCGCcAUCc -3'
miRNA:   3'- cGG-UAGGGGCgUUGCG--UGGCGuUAGu -5'
33267 3' -55.7 NC_007605.1 + 169813 0.7 0.769997
Target:  5'- cCCgAUCCCCGgAACGUccGCCGCcAUCc -3'
miRNA:   3'- cGG-UAGGGGCgUUGCG--UGGCGuUAGu -5'
33267 3' -55.7 NC_007605.1 + 170872 0.7 0.769997
Target:  5'- cCCgAUCCCCGgAACGUccGCCGCcAUCc -3'
miRNA:   3'- cGG-UAGGGGCgUUGCG--UGGCGuUAGu -5'
33267 3' -55.7 NC_007605.1 + 134736 0.7 0.778375
Target:  5'- cGCCGUCCUcgaaggcuagaCGCAgcuguguGCGCGCCGCcagCAu -3'
miRNA:   3'- -CGGUAGGG-----------GCGU-------UGCGUGGCGuuaGU- -5'
33267 3' -55.7 NC_007605.1 + 156008 0.7 0.779299
Target:  5'- aCCAcCCCUGCGGCGC-CUGguGUCu -3'
miRNA:   3'- cGGUaGGGGCGUUGCGuGGCguUAGu -5'
33267 3' -55.7 NC_007605.1 + 62255 0.68 0.839463
Target:  5'- aGCCAUCUCCcCAGCGUcguuuucGCCGCGu--- -3'
miRNA:   3'- -CGGUAGGGGcGUUGCG-------UGGCGUuagu -5'
33267 3' -55.7 NC_007605.1 + 151198 0.68 0.840275
Target:  5'- gGCCcgCCCCccgugGCGugGUACCGaCAuucuAUCAa -3'
miRNA:   3'- -CGGuaGGGG-----CGUugCGUGGC-GU----UAGU- -5'
33267 3' -55.7 NC_007605.1 + 162806 0.68 0.840275
Target:  5'- gGCCGcCCCCGCcacguAGCugcccgucuccgGCACCGgGGUCAg -3'
miRNA:   3'- -CGGUaGGGGCG-----UUG------------CGUGGCgUUAGU- -5'
33267 3' -55.7 NC_007605.1 + 135459 0.68 0.848297
Target:  5'- cGUCAUCCCCGC---GCACCccCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuugCGUGGc-GUUAGu -5'
33267 3' -55.7 NC_007605.1 + 45300 0.68 0.851451
Target:  5'- uCCGUCCCCuGCcACGUACCuaauaguaguccacaGUAGUCGg -3'
miRNA:   3'- cGGUAGGGG-CGuUGCGUGG---------------CGUUAGU- -5'
33267 3' -55.7 NC_007605.1 + 8409 0.68 0.863751
Target:  5'- ----aCCCCGCuAAC-CACUGCGGUCAa -3'
miRNA:   3'- cgguaGGGGCG-UUGcGUGGCGUUAGU- -5'
33267 3' -55.7 NC_007605.1 + 107810 0.68 0.863751
Target:  5'- cGCCAUCaCCCG-GGCGCaACCGCc---- -3'
miRNA:   3'- -CGGUAG-GGGCgUUGCG-UGGCGuuagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.