Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33267 | 3' | -55.7 | NC_007605.1 | + | 153998 | 0.66 | 0.916909 |
Target: 5'- uGCgG-CCCUGCAGCGuCACCGUc-UCGg -3' miRNA: 3'- -CGgUaGGGGCGUUGC-GUGGCGuuAGU- -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 16692 | 0.67 | 0.892133 |
Target: 5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3' miRNA: 3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 19761 | 0.67 | 0.892133 |
Target: 5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3' miRNA: 3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 22830 | 0.67 | 0.892133 |
Target: 5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3' miRNA: 3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 25899 | 0.67 | 0.892133 |
Target: 5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3' miRNA: 3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 28967 | 0.67 | 0.892133 |
Target: 5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3' miRNA: 3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 32036 | 0.67 | 0.892133 |
Target: 5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3' miRNA: 3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 35105 | 0.67 | 0.892133 |
Target: 5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3' miRNA: 3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 135377 | 0.67 | 0.904985 |
Target: 5'- aGCuCGUCCUCGCGcagaGCGCAaaGCGGcCAg -3' miRNA: 3'- -CG-GUAGGGGCGU----UGCGUggCGUUaGU- -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 13623 | 0.67 | 0.892133 |
Target: 5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3' miRNA: 3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 5278 | 0.67 | 0.885366 |
Target: 5'- -gCAUCCCgGCGAC-CACCaGCucuGUCAu -3' miRNA: 3'- cgGUAGGGgCGUUGcGUGG-CGu--UAGU- -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 164394 | 0.68 | 0.87117 |
Target: 5'- gGUCAUCCagguaGUuuCGCACCGCAAaCAc -3' miRNA: 3'- -CGGUAGGgg---CGuuGCGUGGCGUUaGU- -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 63528 | 0.72 | 0.620893 |
Target: 5'- gGCCAUCCCuCGCA--GCACCGuCAAg-- -3' miRNA: 3'- -CGGUAGGG-GCGUugCGUGGC-GUUagu -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 63653 | 0.72 | 0.631083 |
Target: 5'- aGCCGUgCCCCGCcgauGCGCGCCuCuauGUCGc -3' miRNA: 3'- -CGGUA-GGGGCGu---UGCGUGGcGu--UAGU- -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 156008 | 0.7 | 0.779299 |
Target: 5'- aCCAcCCCUGCGGCGC-CUGguGUCu -3' miRNA: 3'- cGGUaGGGGCGUUGCGuGGCguUAGu -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 62255 | 0.68 | 0.839463 |
Target: 5'- aGCCAUCUCCcCAGCGUcguuuucGCCGCGu--- -3' miRNA: 3'- -CGGUAGGGGcGUUGCG-------UGGCGUuagu -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 162806 | 0.68 | 0.840275 |
Target: 5'- gGCCGcCCCCGCcacguAGCugcccgucuccgGCACCGgGGUCAg -3' miRNA: 3'- -CGGUaGGGGCG-----UUG------------CGUGGCgUUAGU- -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 135459 | 0.68 | 0.848297 |
Target: 5'- cGUCAUCCCCGC---GCACCccCAGUCc -3' miRNA: 3'- -CGGUAGGGGCGuugCGUGGc-GUUAGu -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 45300 | 0.68 | 0.851451 |
Target: 5'- uCCGUCCCCuGCcACGUACCuaauaguaguccacaGUAGUCGg -3' miRNA: 3'- cGGUAGGGG-CGuUGCGUGG---------------CGUUAGU- -5' |
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33267 | 3' | -55.7 | NC_007605.1 | + | 107810 | 0.68 | 0.863751 |
Target: 5'- cGCCAUCaCCCG-GGCGCaACCGCc---- -3' miRNA: 3'- -CGGUAG-GGGCgUUGCG-UGGCGuuagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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