miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33267 3' -55.7 NC_007605.1 + 4408 1.1 0.002726
Target:  5'- uGCCAUCCCCGCAACGCACCGCAAUCAg -3'
miRNA:   3'- -CGGUAGGGGCGUUGCGUGGCGUUAGU- -5'
33267 3' -55.7 NC_007605.1 + 5278 0.67 0.885366
Target:  5'- -gCAUCCCgGCGAC-CACCaGCucuGUCAu -3'
miRNA:   3'- cgGUAGGGgCGUUGcGUGG-CGu--UAGU- -5'
33267 3' -55.7 NC_007605.1 + 8409 0.68 0.863751
Target:  5'- ----aCCCCGCuAAC-CACUGCGGUCAa -3'
miRNA:   3'- cgguaGGGGCG-UUGcGUGGCGUUAGU- -5'
33267 3' -55.7 NC_007605.1 + 13623 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 16692 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 19761 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 22830 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 25899 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 28967 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 32036 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 35105 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 40498 0.67 0.892133
Target:  5'- cCCAcCCCCGCcgggccccugGugGCucgGCCGCGGUCc -3'
miRNA:   3'- cGGUaGGGGCG----------UugCG---UGGCGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 41537 0.66 0.937922
Target:  5'- uCCGUCCCCGgGACGUGgUGCu-UCc -3'
miRNA:   3'- cGGUAGGGGCgUUGCGUgGCGuuAGu -5'
33267 3' -55.7 NC_007605.1 + 45300 0.68 0.851451
Target:  5'- uCCGUCCCCuGCcACGUACCuaauaguaguccacaGUAGUCGg -3'
miRNA:   3'- cGGUAGGGG-CGuUGCGUGG---------------CGUUAGU- -5'
33267 3' -55.7 NC_007605.1 + 50560 0.66 0.937922
Target:  5'- cCCGUCCUCggggGCAGCcCACCGCGGc-- -3'
miRNA:   3'- cGGUAGGGG----CGUUGcGUGGCGUUagu -5'
33267 3' -55.7 NC_007605.1 + 52605 0.66 0.922518
Target:  5'- cGCCGccUCaCCCGCcacCGCAUCGcCGGUCc -3'
miRNA:   3'- -CGGU--AG-GGGCGuu-GCGUGGC-GUUAGu -5'
33267 3' -55.7 NC_007605.1 + 54620 0.67 0.891466
Target:  5'- uGCCAUCCguucggcccUCGCGcagACGCGCCaggcccuGCAGUCc -3'
miRNA:   3'- -CGGUAGG---------GGCGU---UGCGUGG-------CGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 54713 0.7 0.731661
Target:  5'- cGCCAcCCCCGCGGC-UACCGCc---- -3'
miRNA:   3'- -CGGUaGGGGCGUUGcGUGGCGuuagu -5'
33267 3' -55.7 NC_007605.1 + 56166 0.66 0.927889
Target:  5'- cGCCGUacaCCUGCGcACGUgcaggGCCGCAuUCu -3'
miRNA:   3'- -CGGUAg--GGGCGU-UGCG-----UGGCGUuAGu -5'
33267 3' -55.7 NC_007605.1 + 60164 0.67 0.878377
Target:  5'- uUCAUCCCCGCAcccagGCGgCuuCCGCAGg-- -3'
miRNA:   3'- cGGUAGGGGCGU-----UGC-Gu-GGCGUUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.