miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33267 3' -55.7 NC_007605.1 + 171410 0.7 0.769997
Target:  5'- cCCgAUCCCCGgAACGUccGCCGCcAUCc -3'
miRNA:   3'- cGG-UAGGGGCgUUGCG--UGGCGuUAGu -5'
33267 3' -55.7 NC_007605.1 + 170872 0.7 0.769997
Target:  5'- cCCgAUCCCCGgAACGUccGCCGCcAUCc -3'
miRNA:   3'- cGG-UAGGGGCgUUGCG--UGGCGuUAGu -5'
33267 3' -55.7 NC_007605.1 + 170350 0.7 0.769997
Target:  5'- cCCgAUCCCCGgAACGUccGCCGCcAUCc -3'
miRNA:   3'- cGG-UAGGGGCgUUGCG--UGGCGuUAGu -5'
33267 3' -55.7 NC_007605.1 + 169813 0.7 0.769997
Target:  5'- cCCgAUCCCCGgAACGUccGCCGCcAUCc -3'
miRNA:   3'- cGG-UAGGGGCgUUGCG--UGGCGuUAGu -5'
33267 3' -55.7 NC_007605.1 + 166390 0.67 0.904985
Target:  5'- cGUCAUUCCCGU--CGUGuuGCAAUCc -3'
miRNA:   3'- -CGGUAGGGGCGuuGCGUggCGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 164394 0.68 0.87117
Target:  5'- gGUCAUCCagguaGUuuCGCACCGCAAaCAc -3'
miRNA:   3'- -CGGUAGGgg---CGuuGCGUGGCGUUaGU- -5'
33267 3' -55.7 NC_007605.1 + 162806 0.68 0.840275
Target:  5'- gGCCGcCCCCGCcacguAGCugcccgucuccgGCACCGgGGUCAg -3'
miRNA:   3'- -CGGUaGGGGCG-----UUG------------CGUGGCgUUAGU- -5'
33267 3' -55.7 NC_007605.1 + 156008 0.7 0.779299
Target:  5'- aCCAcCCCUGCGGCGC-CUGguGUCu -3'
miRNA:   3'- cGGUaGGGGCGUUGCGuGGCguUAGu -5'
33267 3' -55.7 NC_007605.1 + 155540 0.71 0.671771
Target:  5'- cGCCAUcCCCCGCcuccaGCACCGgGAcUCGu -3'
miRNA:   3'- -CGGUA-GGGGCGuug--CGUGGCgUU-AGU- -5'
33267 3' -55.7 NC_007605.1 + 153998 0.66 0.916909
Target:  5'- uGCgG-CCCUGCAGCGuCACCGUc-UCGg -3'
miRNA:   3'- -CGgUaGGGGCGUUGC-GUGGCGuuAGU- -5'
33267 3' -55.7 NC_007605.1 + 151198 0.68 0.840275
Target:  5'- gGCCcgCCCCccgugGCGugGUACCGaCAuucuAUCAa -3'
miRNA:   3'- -CGGuaGGGG-----CGUugCGUGGC-GU----UAGU- -5'
33267 3' -55.7 NC_007605.1 + 148764 0.66 0.916909
Target:  5'- uGCCGcUCCCCGCAuuccugcuuucgGCGCcCCuGCGgAUCc -3'
miRNA:   3'- -CGGU-AGGGGCGU------------UGCGuGG-CGU-UAGu -5'
33267 3' -55.7 NC_007605.1 + 144353 0.66 0.937922
Target:  5'- uCCGUCCCCGgGACGUGgUGCu-UCc -3'
miRNA:   3'- cGGUAGGGGCgUUGCGUgGCGuuAGu -5'
33267 3' -55.7 NC_007605.1 + 135459 0.68 0.848297
Target:  5'- cGUCAUCCCCGC---GCACCccCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuugCGUGGc-GUUAGu -5'
33267 3' -55.7 NC_007605.1 + 135377 0.67 0.904985
Target:  5'- aGCuCGUCCUCGCGcagaGCGCAaaGCGGcCAg -3'
miRNA:   3'- -CG-GUAGGGGCGU----UGCGUggCGUUaGU- -5'
33267 3' -55.7 NC_007605.1 + 134736 0.7 0.778375
Target:  5'- cGCCGUCCUcgaaggcuagaCGCAgcuguguGCGCGCCGCcagCAu -3'
miRNA:   3'- -CGGUAGGG-----------GCGU-------UGCGUGGCGuuaGU- -5'
33267 3' -55.7 NC_007605.1 + 108249 0.73 0.570216
Target:  5'- aCCAUCaCCCGCAccCGCACCcCAGUCc -3'
miRNA:   3'- cGGUAG-GGGCGUu-GCGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 107810 0.68 0.863751
Target:  5'- cGCCAUCaCCCG-GGCGCaACCGCc---- -3'
miRNA:   3'- -CGGUAG-GGGCgUUGCG-UGGCGuuagu -5'
33267 3' -55.7 NC_007605.1 + 100738 0.66 0.927889
Target:  5'- cCCGguUCCCCGCGcggcACGCcccuGCCcgGCAGUCu -3'
miRNA:   3'- cGGU--AGGGGCGU----UGCG----UGG--CGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 88039 0.66 0.927889
Target:  5'- cGCCAguaugcgaggCCCCGCGGCaggagGCcCCGCGG-CAg -3'
miRNA:   3'- -CGGUa---------GGGGCGUUG-----CGuGGCGUUaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.