miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33267 3' -55.7 NC_007605.1 + 4408 1.1 0.002726
Target:  5'- uGCCAUCCCCGCAACGCACCGCAAUCAg -3'
miRNA:   3'- -CGGUAGGGGCGUUGCGUGGCGUUAGU- -5'
33267 3' -55.7 NC_007605.1 + 81846 0.66 0.927889
Target:  5'- uGCCAgaaguuUCCCCGgGGCccuGCAuaGCAAUCu -3'
miRNA:   3'- -CGGU------AGGGGCgUUG---CGUggCGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 144353 0.66 0.937922
Target:  5'- uCCGUCCCCGgGACGUGgUGCu-UCc -3'
miRNA:   3'- cGGUAGGGGCgUUGCGUgGCGuuAGu -5'
33267 3' -55.7 NC_007605.1 + 41537 0.66 0.937922
Target:  5'- uCCGUCCCCGgGACGUGgUGCu-UCc -3'
miRNA:   3'- cGGUAGGGGCgUUGCGUgGCGuuAGu -5'
33267 3' -55.7 NC_007605.1 + 171410 0.7 0.769997
Target:  5'- cCCgAUCCCCGgAACGUccGCCGCcAUCc -3'
miRNA:   3'- cGG-UAGGGGCgUUGCG--UGGCGuUAGu -5'
33267 3' -55.7 NC_007605.1 + 170872 0.7 0.769997
Target:  5'- cCCgAUCCCCGgAACGUccGCCGCcAUCc -3'
miRNA:   3'- cGG-UAGGGGCgUUGCG--UGGCGuUAGu -5'
33267 3' -55.7 NC_007605.1 + 169813 0.7 0.769997
Target:  5'- cCCgAUCCCCGgAACGUccGCCGCcAUCc -3'
miRNA:   3'- cGG-UAGGGGCgUUGCG--UGGCGuUAGu -5'
33267 3' -55.7 NC_007605.1 + 134736 0.7 0.778375
Target:  5'- cGCCGUCCUcgaaggcuagaCGCAgcuguguGCGCGCCGCcagCAu -3'
miRNA:   3'- -CGGUAGGG-----------GCGU-------UGCGUGGCGuuaGU- -5'
33267 3' -55.7 NC_007605.1 + 60164 0.67 0.878377
Target:  5'- uUCAUCCCCGCAcccagGCGgCuuCCGCAGg-- -3'
miRNA:   3'- cGGUAGGGGCGU-----UGC-Gu-GGCGUUagu -5'
33267 3' -55.7 NC_007605.1 + 52605 0.66 0.922518
Target:  5'- cGCCGccUCaCCCGCcacCGCAUCGcCGGUCc -3'
miRNA:   3'- -CGGU--AG-GGGCGuu-GCGUGGC-GUUAGu -5'
33267 3' -55.7 NC_007605.1 + 40498 0.67 0.892133
Target:  5'- cCCAcCCCCGCcgggccccugGugGCucgGCCGCGGUCc -3'
miRNA:   3'- cGGUaGGGGCG----------UugCG---UGGCGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 8409 0.68 0.863751
Target:  5'- ----aCCCCGCuAAC-CACUGCGGUCAa -3'
miRNA:   3'- cgguaGGGGCG-UUGcGUGGCGUUAGU- -5'
33267 3' -55.7 NC_007605.1 + 155540 0.71 0.671771
Target:  5'- cGCCAUcCCCCGCcuccaGCACCGgGAcUCGu -3'
miRNA:   3'- -CGGUA-GGGGCGuug--CGUGGCgUU-AGU- -5'
33267 3' -55.7 NC_007605.1 + 166390 0.67 0.904985
Target:  5'- cGUCAUUCCCGU--CGUGuuGCAAUCc -3'
miRNA:   3'- -CGGUAGGGGCGuuGCGUggCGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 63249 0.7 0.731661
Target:  5'- gGCCAgcagCCCUGC-GCGCcagacggccGCCGCAcUCAg -3'
miRNA:   3'- -CGGUa---GGGGCGuUGCG---------UGGCGUuAGU- -5'
33267 3' -55.7 NC_007605.1 + 151198 0.68 0.840275
Target:  5'- gGCCcgCCCCccgugGCGugGUACCGaCAuucuAUCAa -3'
miRNA:   3'- -CGGuaGGGG-----CGUugCGUGGC-GU----UAGU- -5'
33267 3' -55.7 NC_007605.1 + 66550 0.67 0.904985
Target:  5'- aCCggCCCCGCAACcuGCGCCGg----- -3'
miRNA:   3'- cGGuaGGGGCGUUG--CGUGGCguuagu -5'
33267 3' -55.7 NC_007605.1 + 88039 0.66 0.927889
Target:  5'- cGCCAguaugcgaggCCCCGCGGCaggagGCcCCGCGG-CAg -3'
miRNA:   3'- -CGGUa---------GGGGCGUUG-----CGuGGCGUUaGU- -5'
33267 3' -55.7 NC_007605.1 + 54713 0.7 0.731661
Target:  5'- cGCCAcCCCCGCGGC-UACCGCc---- -3'
miRNA:   3'- -CGGUaGGGGCGUUGcGUGGCGuuagu -5'
33267 3' -55.7 NC_007605.1 + 170350 0.7 0.769997
Target:  5'- cCCgAUCCCCGgAACGUccGCCGCcAUCc -3'
miRNA:   3'- cGG-UAGGGGCgUUGCG--UGGCGuUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.