miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33268 5' -58.8 NC_007605.1 + 39056 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 39139 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 39148 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 39180 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 39264 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 39273 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 39305 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 39389 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 39398 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 39430 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 39514 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 39523 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 39555 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 39639 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 39648 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 39680 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 39764 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 39805 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 39889 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 39930 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.