miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33268 5' -58.8 NC_007605.1 + 2704 0.66 0.78362
Target:  5'- cGGcggCCCGGCGccaaCAGGCcuuucagaccaggGCGGCGGCUg -3'
miRNA:   3'- -CCaa-GGGUCGUc---GUCCG-------------CGUCGCUGA- -5'
33268 5' -58.8 NC_007605.1 + 4852 1.1 0.001409
Target:  5'- aGGUUCCCAGCAGCAGGCGCAGCGACUg -3'
miRNA:   3'- -CCAAGGGUCGUCGUCCGCGUCGCUGA- -5'
33268 5' -58.8 NC_007605.1 + 24941 0.69 0.658087
Target:  5'- gGGUcUCCAGCAGgguccggcaucuuCAGGgGCAGCaGGCUc -3'
miRNA:   3'- -CCAaGGGUCGUC-------------GUCCgCGUCG-CUGA- -5'
33268 5' -58.8 NC_007605.1 + 37217 0.66 0.819516
Target:  5'- aGGggCaggggCAGgGGCAGGgGCAGgGGCa -3'
miRNA:   3'- -CCaaGg----GUCgUCGUCCgCGUCgCUGa -5'
33268 5' -58.8 NC_007605.1 + 38274 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 38399 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 38515 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 38524 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 38556 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 38640 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 38649 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 38681 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 38765 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 38774 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 38806 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 38890 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 38899 0.72 0.463762
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCGGg- -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 38931 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 39015 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 39023 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.