miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33268 5' -58.8 NC_007605.1 + 24941 0.69 0.658087
Target:  5'- gGGUcUCCAGCAGgguccggcaucuuCAGGgGCAGCaGGCUc -3'
miRNA:   3'- -CCAaGGGUCGUC-------------GUCCgCGUCG-CUGA- -5'
33268 5' -58.8 NC_007605.1 + 38649 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 38774 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 39023 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 39148 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 39273 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 39398 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 39523 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 39648 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 38524 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 38399 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 38274 0.69 0.639016
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5'
33268 5' -58.8 NC_007605.1 + 61430 0.73 0.393986
Target:  5'- ---aCCCAcagccgucGCGGCGGGgGCGGCGGCg -3'
miRNA:   3'- ccaaGGGU--------CGUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 52860 0.73 0.402333
Target:  5'- aGGUgUCCCAGUAGgAgucGGCgGCGGCGGCg -3'
miRNA:   3'- -CCA-AGGGUCGUCgU---CCG-CGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 38899 0.72 0.463762
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCGGg- -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 71373 0.71 0.520089
Target:  5'- --cUCCCGGgGGCAGGUGuCGGCG-CUu -3'
miRNA:   3'- ccaAGGGUCgUCGUCCGC-GUCGCuGA- -5'
33268 5' -58.8 NC_007605.1 + 157272 0.71 0.53947
Target:  5'- aGGUcUCCCAGCAuGCGguugaucuggcGGCGCAGgGAg- -3'
miRNA:   3'- -CCA-AGGGUCGU-CGU-----------CCGCGUCgCUga -5'
33268 5' -58.8 NC_007605.1 + 155342 0.71 0.53947
Target:  5'- --gUCCCGGUgcuggaGGCGggggauGGCGCGGCGGCa -3'
miRNA:   3'- ccaAGGGUCG------UCGU------CCGCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 62589 0.7 0.598866
Target:  5'- aGGccgCCCggaguaGGUAGUAGGCGUGGUGGCg -3'
miRNA:   3'- -CCaa-GGG------UCGUCGUCCGCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 151729 0.69 0.608886
Target:  5'- aGGcUCCCGGCcucaccCAGGaagaGCAGCGGCa -3'
miRNA:   3'- -CCaAGGGUCGuc----GUCCg---CGUCGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.