miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33268 5' -58.8 NC_007605.1 + 4852 1.1 0.001409
Target:  5'- aGGUUCCCAGCAGCAGGCGCAGCGACUg -3'
miRNA:   3'- -CCAAGGGUCGUCGUCCGCGUCGCUGA- -5'
33268 5' -58.8 NC_007605.1 + 153146 0.76 0.282858
Target:  5'- gGGggCCCuuAGCauGGgAGGCGCGGCGACg -3'
miRNA:   3'- -CCaaGGG--UCG--UCgUCCGCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 111778 0.73 0.385752
Target:  5'- gGGUUCCUgaGGCAGCAGGCagagcuguuuuGCcauuuuauucaGGCGGCUa -3'
miRNA:   3'- -CCAAGGG--UCGUCGUCCG-----------CG-----------UCGCUGA- -5'
33268 5' -58.8 NC_007605.1 + 61430 0.73 0.393986
Target:  5'- ---aCCCAcagccgucGCGGCGGGgGCGGCGGCg -3'
miRNA:   3'- ccaaGGGU--------CGUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 52860 0.73 0.402333
Target:  5'- aGGUgUCCCAGUAGgAgucGGCgGCGGCGGCg -3'
miRNA:   3'- -CCA-AGGGUCGUCgU---CCG-CGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 38899 0.72 0.463762
Target:  5'- gGGUUCCUGGCGcucCGGGgGCAGCGGg- -3'
miRNA:   3'- -CCAAGGGUCGUc--GUCCgCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 38806 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 39930 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 39805 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 39680 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 39555 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 39305 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 38931 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 39056 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 39180 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 38681 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 38556 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 39430 0.72 0.472936
Target:  5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3'
miRNA:   3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 126184 0.71 0.500988
Target:  5'- ---cUCCGGCAGCAGGgaCGCAGCaACUa -3'
miRNA:   3'- ccaaGGGUCGUCGUCC--GCGUCGcUGA- -5'
33268 5' -58.8 NC_007605.1 + 71373 0.71 0.520089
Target:  5'- --cUCCCGGgGGCAGGUGuCGGCG-CUu -3'
miRNA:   3'- ccaAGGGUCgUCGUCCGC-GUCGCuGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.