Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33268 | 5' | -58.8 | NC_007605.1 | + | 4852 | 1.1 | 0.001409 |
Target: 5'- aGGUUCCCAGCAGCAGGCGCAGCGACUg -3' miRNA: 3'- -CCAAGGGUCGUCGUCCGCGUCGCUGA- -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 62220 | 0.69 | 0.659089 |
Target: 5'- ---gCCCGGCGGCGGGCgGUagagauccugGGCGugUa -3' miRNA: 3'- ccaaGGGUCGUCGUCCG-CG----------UCGCugA- -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 39764 | 0.68 | 0.669098 |
Target: 5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3' miRNA: 3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 136669 | 0.66 | 0.819516 |
Target: 5'- ---cCCCAggaccGUAGgaAGGCGCGGUGGCUa -3' miRNA: 3'- ccaaGGGU-----CGUCg-UCCGCGUCGCUGA- -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 39680 | 0.72 | 0.472936 |
Target: 5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3' miRNA: 3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 39555 | 0.72 | 0.472936 |
Target: 5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3' miRNA: 3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 39305 | 0.72 | 0.472936 |
Target: 5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3' miRNA: 3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 39180 | 0.72 | 0.472936 |
Target: 5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3' miRNA: 3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 38806 | 0.72 | 0.472936 |
Target: 5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3' miRNA: 3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 154868 | 0.69 | 0.628968 |
Target: 5'- -cUUUgCAGCGGCcccgagGGGCGCAgGCGGCUc -3' miRNA: 3'- ccAAGgGUCGUCG------UCCGCGU-CGCUGA- -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 38556 | 0.72 | 0.472936 |
Target: 5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3' miRNA: 3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 38931 | 0.72 | 0.472936 |
Target: 5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3' miRNA: 3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 153146 | 0.76 | 0.282858 |
Target: 5'- gGGggCCCuuAGCauGGgAGGCGCGGCGACg -3' miRNA: 3'- -CCaaGGG--UCG--UCgUCCGCGUCGCUGa -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 126184 | 0.71 | 0.500988 |
Target: 5'- ---cUCCGGCAGCAGGgaCGCAGCaACUa -3' miRNA: 3'- ccaaGGGUCGUCGUCC--GCGUCGcUGA- -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 39930 | 0.72 | 0.472936 |
Target: 5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3' miRNA: 3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 39056 | 0.72 | 0.472936 |
Target: 5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3' miRNA: 3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 49032 | 0.7 | 0.588871 |
Target: 5'- gGGgcCgCCAGCccgAGCGGGCGCucGGUGGCUc -3' miRNA: 3'- -CCaaG-GGUCG---UCGUCCGCG--UCGCUGA- -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 39889 | 0.68 | 0.669098 |
Target: 5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3' miRNA: 3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 39805 | 0.72 | 0.472936 |
Target: 5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3' miRNA: 3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 39430 | 0.72 | 0.472936 |
Target: 5'- ---aCCUGGCGGC-GGCGCAGCGGu- -3' miRNA: 3'- ccaaGGGUCGUCGuCCGCGUCGCUga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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