miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33268 5' -58.8 NC_007605.1 + 169642 0.66 0.802317
Target:  5'- ---cCCCAGCA--AGcCGCAGCGACUu -3'
miRNA:   3'- ccaaGGGUCGUcgUCcGCGUCGCUGA- -5'
33268 5' -58.8 NC_007605.1 + 162550 0.68 0.689022
Target:  5'- aGGUUCUgguuCAGCugccAGUAGGUGUAGCGGg- -3'
miRNA:   3'- -CCAAGG----GUCG----UCGUCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 160837 0.67 0.775426
Target:  5'- ---aCCCAGCAGCagcccggccgAGGC-CuGCGACg -3'
miRNA:   3'- ccaaGGGUCGUCG----------UCCGcGuCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 157272 0.71 0.53947
Target:  5'- aGGUcUCCCAGCAuGCGguugaucuggcGGCGCAGgGAg- -3'
miRNA:   3'- -CCA-AGGGUCGU-CGU-----------CCGCGUCgCUga -5'
33268 5' -58.8 NC_007605.1 + 156664 0.68 0.689022
Target:  5'- uGG-UCCUGGUGGCGGGgGUGGUGAUc -3'
miRNA:   3'- -CCaAGGGUCGUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 155342 0.71 0.53947
Target:  5'- --gUCCCGGUgcuggaGGCGggggauGGCGCGGCGGCa -3'
miRNA:   3'- ccaAGGGUCG------UCGU------CCGCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 154868 0.69 0.628968
Target:  5'- -cUUUgCAGCGGCcccgagGGGCGCAgGCGGCUc -3'
miRNA:   3'- ccAAGgGUCGUCG------UCCGCGU-CGCUGA- -5'
33268 5' -58.8 NC_007605.1 + 153146 0.76 0.282858
Target:  5'- gGGggCCCuuAGCauGGgAGGCGCGGCGACg -3'
miRNA:   3'- -CCaaGGG--UCG--UCgUCCGCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 151729 0.69 0.608886
Target:  5'- aGGcUCCCGGCcucaccCAGGaagaGCAGCGGCa -3'
miRNA:   3'- -CCaAGGGUCGuc----GUCCg---CGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 151020 0.68 0.718543
Target:  5'- ---gCCCGGgGGCuGGCGaGGCGGCg -3'
miRNA:   3'- ccaaGGGUCgUCGuCCGCgUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 148975 0.67 0.728253
Target:  5'- uGUUCCCuGGCAGCgugAGcGCGCAGCc--- -3'
miRNA:   3'- cCAAGGG-UCGUCG---UC-CGCGUCGcuga -5'
33268 5' -58.8 NC_007605.1 + 143423 0.66 0.810134
Target:  5'- gGGUgcacaccUCCCAGcCGGCccGGCGUccuuGCGGCg -3'
miRNA:   3'- -CCA-------AGGGUC-GUCGu-CCGCGu---CGCUGa -5'
33268 5' -58.8 NC_007605.1 + 137051 0.68 0.669098
Target:  5'- --cUCCCGGC-GCAGGgccUGUAGCGugUg -3'
miRNA:   3'- ccaAGGGUCGuCGUCC---GCGUCGCugA- -5'
33268 5' -58.8 NC_007605.1 + 136669 0.66 0.819516
Target:  5'- ---cCCCAggaccGUAGgaAGGCGCGGUGGCUa -3'
miRNA:   3'- ccaaGGGU-----CGUCg-UCCGCGUCGCUGA- -5'
33268 5' -58.8 NC_007605.1 + 136180 0.67 0.766204
Target:  5'- --aUCCCAGCcgAGUcguauuuaaAGGC-CAGCGACg -3'
miRNA:   3'- ccaAGGGUCG--UCG---------UCCGcGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 135981 0.66 0.802317
Target:  5'- gGGUUCUCgagggAGgGGCAGGCGC--UGACUc -3'
miRNA:   3'- -CCAAGGG-----UCgUCGUCCGCGucGCUGA- -5'
33268 5' -58.8 NC_007605.1 + 135303 0.66 0.819516
Target:  5'- gGGgccgUCUguGCAuguguGUGGGCGCAGCuugGACUg -3'
miRNA:   3'- -CCa---AGGguCGU-----CGUCCGCGUCG---CUGA- -5'
33268 5' -58.8 NC_007605.1 + 126184 0.71 0.500988
Target:  5'- ---cUCCGGCAGCAGGgaCGCAGCaACUa -3'
miRNA:   3'- ccaaGGGUCGUCGUCC--GCGUCGcUGA- -5'
33268 5' -58.8 NC_007605.1 + 123107 0.66 0.819516
Target:  5'- cGUUCCCAGUAGguGuugauGCaCAGgGACa -3'
miRNA:   3'- cCAAGGGUCGUCguC-----CGcGUCgCUGa -5'
33268 5' -58.8 NC_007605.1 + 119766 0.67 0.766204
Target:  5'- aGGUUCCggcccugggaCGGCAGCAGcCGCcGgGACg -3'
miRNA:   3'- -CCAAGG----------GUCGUCGUCcGCGuCgCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.