Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33268 | 5' | -58.8 | NC_007605.1 | + | 38765 | 0.68 | 0.669098 |
Target: 5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3' miRNA: 3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 38890 | 0.68 | 0.669098 |
Target: 5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3' miRNA: 3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 62220 | 0.69 | 0.659089 |
Target: 5'- ---gCCCGGCGGCGGGCgGUagagauccugGGCGugUa -3' miRNA: 3'- ccaaGGGUCGUCGUCCG-CG----------UCGCugA- -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 24941 | 0.69 | 0.658087 |
Target: 5'- gGGUcUCCAGCAGgguccggcaucuuCAGGgGCAGCaGGCUc -3' miRNA: 3'- -CCAaGGGUCGUC-------------GUCCgCGUCG-CUGA- -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 39023 | 0.69 | 0.639016 |
Target: 5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3' miRNA: 3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 38274 | 0.69 | 0.639016 |
Target: 5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3' miRNA: 3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 38399 | 0.69 | 0.639016 |
Target: 5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3' miRNA: 3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 38524 | 0.69 | 0.639016 |
Target: 5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3' miRNA: 3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 38649 | 0.69 | 0.639016 |
Target: 5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3' miRNA: 3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 39648 | 0.69 | 0.639016 |
Target: 5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3' miRNA: 3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 39523 | 0.69 | 0.639016 |
Target: 5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3' miRNA: 3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 39398 | 0.69 | 0.639016 |
Target: 5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3' miRNA: 3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 39273 | 0.69 | 0.639016 |
Target: 5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3' miRNA: 3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 39148 | 0.69 | 0.639016 |
Target: 5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3' miRNA: 3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 38774 | 0.69 | 0.639016 |
Target: 5'- gGGUUCCUGGCGcucCGGGgGCAGCcgGGCg -3' miRNA: 3'- -CCAAGGGUCGUc--GUCCgCGUCG--CUGa -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 154868 | 0.69 | 0.628968 |
Target: 5'- -cUUUgCAGCGGCcccgagGGGCGCAgGCGGCUc -3' miRNA: 3'- ccAAGgGUCGUCG------UCCGCGU-CGCUGA- -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 151729 | 0.69 | 0.608886 |
Target: 5'- aGGcUCCCGGCcucaccCAGGaagaGCAGCGGCa -3' miRNA: 3'- -CCaAGGGUCGuc----GUCCg---CGUCGCUGa -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 62589 | 0.7 | 0.598866 |
Target: 5'- aGGccgCCCggaguaGGUAGUAGGCGUGGUGGCg -3' miRNA: 3'- -CCaa-GGG------UCGUCGUCCGCGUCGCUGa -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 49032 | 0.7 | 0.588871 |
Target: 5'- gGGgcCgCCAGCccgAGCGGGCGCucGGUGGCUc -3' miRNA: 3'- -CCaaG-GGUCG---UCGUCCGCG--UCGCUGA- -5' |
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33268 | 5' | -58.8 | NC_007605.1 | + | 157272 | 0.71 | 0.53947 |
Target: 5'- aGGUcUCCCAGCAuGCGguugaucuggcGGCGCAGgGAg- -3' miRNA: 3'- -CCA-AGGGUCGU-CGU-----------CCGCGUCgCUga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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