miRNA display CGI


Results 21 - 40 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33268 5' -58.8 NC_007605.1 + 78389 0.67 0.766204
Target:  5'- uGGggCCUGuGCuuGCAGGUGCGGUGAg- -3'
miRNA:   3'- -CCaaGGGU-CGu-CGUCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 105633 0.67 0.765275
Target:  5'- aGGUUCagguCCAGUAGCAGGagacccuCGCuguGUGGCg -3'
miRNA:   3'- -CCAAG----GGUCGUCGUCC-------GCGu--CGCUGa -5'
33268 5' -58.8 NC_007605.1 + 45405 0.67 0.756867
Target:  5'- cGGUUUCUGGUAgGCAGGUgGCAGC-ACa -3'
miRNA:   3'- -CCAAGGGUCGU-CGUCCG-CGUCGcUGa -5'
33268 5' -58.8 NC_007605.1 + 103044 0.67 0.756867
Target:  5'- uGGgUCCCGGCGGCAacaacccagcGGCGuCAGCc--- -3'
miRNA:   3'- -CCaAGGGUCGUCGU----------CCGC-GUCGcuga -5'
33268 5' -58.8 NC_007605.1 + 74277 0.67 0.728253
Target:  5'- ---cUCCGcCGGCAGGUGCAGCGuCa -3'
miRNA:   3'- ccaaGGGUcGUCGUCCGCGUCGCuGa -5'
33268 5' -58.8 NC_007605.1 + 148975 0.67 0.728253
Target:  5'- uGUUCCCuGGCAGCgugAGcGCGCAGCc--- -3'
miRNA:   3'- cCAAGGG-UCGUCG---UC-CGCGUCGcuga -5'
33268 5' -58.8 NC_007605.1 + 151020 0.68 0.718543
Target:  5'- ---gCCCGGgGGCuGGCGaGGCGGCg -3'
miRNA:   3'- ccaaGGGUCgUCGuCCGCgUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 162550 0.68 0.689022
Target:  5'- aGGUUCUgguuCAGCugccAGUAGGUGUAGCGGg- -3'
miRNA:   3'- -CCAAGG----GUCG----UCGUCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 156664 0.68 0.689022
Target:  5'- uGG-UCCUGGUGGCGGGgGUGGUGAUc -3'
miRNA:   3'- -CCaAGGGUCGUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 137051 0.68 0.669098
Target:  5'- --cUCCCGGC-GCAGGgccUGUAGCGugUg -3'
miRNA:   3'- ccaAGGGUCGuCGUCC---GCGUCGCugA- -5'
33268 5' -58.8 NC_007605.1 + 39764 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 38515 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 38890 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 39514 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 39889 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 39264 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 39015 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 38765 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 38640 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 39139 0.68 0.669098
Target:  5'- ---aCCCGG-AGCGGG-GCAGCGGCc -3'
miRNA:   3'- ccaaGGGUCgUCGUCCgCGUCGCUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.