miRNA display CGI


Results 61 - 80 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33269 3' -55 NC_007605.1 + 56482 0.66 0.936541
Target:  5'- aGGUCGGUCAGGcgucuGCggGcCGCCUCCAGg -3'
miRNA:   3'- -CCGGUCGGUUU-----UGaaC-GUGGGGGUCg -5'
33269 3' -55 NC_007605.1 + 61969 0.66 0.936541
Target:  5'- gGGCaCAGCCGcGACgggggGCGuuuguCCCCC-GCu -3'
miRNA:   3'- -CCG-GUCGGUuUUGaa---CGU-----GGGGGuCG- -5'
33269 3' -55 NC_007605.1 + 33347 0.66 0.936541
Target:  5'- -aUCAGCCAGGGCUucaUGCcCUCCuCAGUu -3'
miRNA:   3'- ccGGUCGGUUUUGA---ACGuGGGG-GUCG- -5'
33269 3' -55 NC_007605.1 + 14934 0.66 0.936541
Target:  5'- -aUCAGCCAGGGCUucaUGCcCUCCuCAGUu -3'
miRNA:   3'- ccGGUCGGUUUUGA---ACGuGGGG-GUCG- -5'
33269 3' -55 NC_007605.1 + 66453 0.66 0.936541
Target:  5'- cGCUGGCCuuacACUccauCACCCCCAGa -3'
miRNA:   3'- cCGGUCGGuuu-UGAac--GUGGGGGUCg -5'
33269 3' -55 NC_007605.1 + 160669 0.66 0.936541
Target:  5'- gGGuCCAGCCGG----UGCACaCgCUCAGCu -3'
miRNA:   3'- -CC-GGUCGGUUuugaACGUG-G-GGGUCG- -5'
33269 3' -55 NC_007605.1 + 158815 0.66 0.936541
Target:  5'- uGCgCAGaccCCAGAGCagcccGCACCCCCcGCc -3'
miRNA:   3'- cCG-GUC---GGUUUUGaa---CGUGGGGGuCG- -5'
33269 3' -55 NC_007605.1 + 39095 0.66 0.936541
Target:  5'- cGGCUGccccggagcGCCAGGAaccccgGCugCCCCAGg -3'
miRNA:   3'- -CCGGU---------CGGUUUUgaa---CGugGGGGUCg -5'
33269 3' -55 NC_007605.1 + 88583 0.66 0.936541
Target:  5'- gGGCCGGC---GGCUccugGUAUCCCUGGUa -3'
miRNA:   3'- -CCGGUCGguuUUGAa---CGUGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 50851 0.66 0.936541
Target:  5'- cGGCCgucgGGCUgcGACcccgUGCGCCCgugguggccgCCGGCg -3'
miRNA:   3'- -CCGG----UCGGuuUUGa---ACGUGGG----------GGUCG- -5'
33269 3' -55 NC_007605.1 + 88505 0.66 0.936541
Target:  5'- gGGCCGGC---GGCUccugGUAUCCCUGGUa -3'
miRNA:   3'- -CCGGUCGguuUUGAa---CGUGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 27209 0.66 0.936541
Target:  5'- -aUCAGCCAGGGCUucaUGCcCUCCuCAGUu -3'
miRNA:   3'- ccGGUCGGUUUUGA---ACGuGGGG-GUCG- -5'
33269 3' -55 NC_007605.1 + 5074 0.66 0.936541
Target:  5'- aGGCC-GCCAggAGGCUUuCaugGCCCCUGGUg -3'
miRNA:   3'- -CCGGuCGGU--UUUGAAcG---UGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 129409 0.66 0.931525
Target:  5'- aGGCCgagagaAGCaCAGAugUgGCGCCUCCAa- -3'
miRNA:   3'- -CCGG------UCG-GUUUugAaCGUGGGGGUcg -5'
33269 3' -55 NC_007605.1 + 108994 0.66 0.931525
Target:  5'- uGGCaAGCCcgggaGAGACUgcuCACCCCgGGUg -3'
miRNA:   3'- -CCGgUCGG-----UUUUGAac-GUGGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 155796 0.66 0.931525
Target:  5'- aGGCCAGCaccuucGACcgcaGgACCCCCuGCc -3'
miRNA:   3'- -CCGGUCGguu---UUGaa--CgUGGGGGuCG- -5'
33269 3' -55 NC_007605.1 + 105301 0.66 0.931525
Target:  5'- gGGCCcgcAGCC-AggUUUGCGCgUCCcGCg -3'
miRNA:   3'- -CCGG---UCGGuUuuGAACGUGgGGGuCG- -5'
33269 3' -55 NC_007605.1 + 39763 0.66 0.931525
Target:  5'- gGGgCAGCCGGggUUccugGCGCUCCaCuGCa -3'
miRNA:   3'- -CCgGUCGGUUuuGAa---CGUGGGG-GuCG- -5'
33269 3' -55 NC_007605.1 + 154145 0.66 0.931525
Target:  5'- aGGCC-GCCAGcAGCUucuugauggccuUGCGCUUggCCAGCc -3'
miRNA:   3'- -CCGGuCGGUU-UUGA------------ACGUGGG--GGUCG- -5'
33269 3' -55 NC_007605.1 + 147784 0.66 0.926803
Target:  5'- gGGCUaacucuauGGCCAGAGCUaggauguacaaauugGCGCUCCCucauccAGCg -3'
miRNA:   3'- -CCGG--------UCGGUUUUGAa--------------CGUGGGGG------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.