miRNA display CGI


Results 41 - 60 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33269 3' -55 NC_007605.1 + 39220 0.66 0.941318
Target:  5'- cGGCUGcccccggagcGCCAGGAaccccgGCugCCCCAGg -3'
miRNA:   3'- -CCGGU----------CGGUUUUgaa---CGugGGGGUCg -5'
33269 3' -55 NC_007605.1 + 23767 0.66 0.941318
Target:  5'- aGGCCcuGGaCCAAcccGGCccggGC-CCCCCGGUa -3'
miRNA:   3'- -CCGG--UC-GGUU---UUGaa--CGuGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 26836 0.66 0.941318
Target:  5'- aGGCCcuGGaCCAAcccGGCccggGC-CCCCCGGUa -3'
miRNA:   3'- -CCGG--UC-GGUU---UUGaa--CGuGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 39345 0.66 0.941318
Target:  5'- cGGCUGcccccggagcGCCAGGAaccccgGCugCCCCAGg -3'
miRNA:   3'- -CCGGU----------CGGUUUUgaa---CGugGGGGUCg -5'
33269 3' -55 NC_007605.1 + 53154 0.66 0.941318
Target:  5'- -cCCAGCCGGAcgcccccaaGCUauUGguCCCCC-GCa -3'
miRNA:   3'- ccGGUCGGUUU---------UGA--ACguGGGGGuCG- -5'
33269 3' -55 NC_007605.1 + 132984 0.66 0.941318
Target:  5'- uGGCaCAGUCAcacAACUgggcgGUGCCCuCUAGCc -3'
miRNA:   3'- -CCG-GUCGGUu--UUGAa----CGUGGG-GGUCG- -5'
33269 3' -55 NC_007605.1 + 38721 0.66 0.941318
Target:  5'- cGGCUGcccccggagcGCCAGGAaccccgGCugCCCCAGg -3'
miRNA:   3'- -CCGGU----------CGGUUUUgaa---CGugGGGGUCg -5'
33269 3' -55 NC_007605.1 + 115298 0.66 0.941318
Target:  5'- gGGCCcuGGUCAGGGgaaUUGCucauauuuuuaGCCCCCAcGCu -3'
miRNA:   3'- -CCGG--UCGGUUUUg--AACG-----------UGGGGGU-CG- -5'
33269 3' -55 NC_007605.1 + 38971 0.66 0.941318
Target:  5'- cGGCUGcccccggagcGCCAGGAaccccgGCugCCCCAGg -3'
miRNA:   3'- -CCGGU----------CGGUUUUgaa---CGugGGGGUCg -5'
33269 3' -55 NC_007605.1 + 17629 0.66 0.941318
Target:  5'- aGGCCcuGGaCCAAcccGGCccggGC-CCCCCGGUa -3'
miRNA:   3'- -CCGG--UC-GGUU---UUGaa--CGuGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 14560 0.66 0.941318
Target:  5'- aGGCCcuGGaCCAAcccGGCccggGC-CCCCCGGUa -3'
miRNA:   3'- -CCGG--UC-GGUU---UUGaa--CGuGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 39845 0.66 0.941318
Target:  5'- cGGCUGcccccggagcGCCAGGAaccccgGCugCCCCAGg -3'
miRNA:   3'- -CCGGU----------CGGUUUUgaa---CGugGGGGUCg -5'
33269 3' -55 NC_007605.1 + 80646 0.66 0.940851
Target:  5'- aGGCCauccggcGGCCAGggUUUGCAgUCUCCAu- -3'
miRNA:   3'- -CCGG-------UCGGUUuuGAACGU-GGGGGUcg -5'
33269 3' -55 NC_007605.1 + 84927 0.66 0.940382
Target:  5'- uGGCCAauGCCccuGCgaccuaucccuaUGCGCCCCUuGCg -3'
miRNA:   3'- -CCGGU--CGGuuuUGa-----------ACGUGGGGGuCG- -5'
33269 3' -55 NC_007605.1 + 14934 0.66 0.936541
Target:  5'- -aUCAGCCAGGGCUucaUGCcCUCCuCAGUu -3'
miRNA:   3'- ccGGUCGGUUUUGA---ACGuGGGG-GUCG- -5'
33269 3' -55 NC_007605.1 + 66453 0.66 0.936541
Target:  5'- cGCUGGCCuuacACUccauCACCCCCAGa -3'
miRNA:   3'- cCGGUCGGuuu-UGAac--GUGGGGGUCg -5'
33269 3' -55 NC_007605.1 + 24140 0.66 0.936541
Target:  5'- -aUCAGCCAGGGCUucaUGCcCUCCuCAGUu -3'
miRNA:   3'- ccGGUCGGUUUUGA---ACGuGGGG-GUCG- -5'
33269 3' -55 NC_007605.1 + 88583 0.66 0.936541
Target:  5'- gGGCCGGC---GGCUccugGUAUCCCUGGUa -3'
miRNA:   3'- -CCGGUCGguuUUGAa---CGUGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 18002 0.66 0.936541
Target:  5'- -aUCAGCCAGGGCUucaUGCcCUCCuCAGUu -3'
miRNA:   3'- ccGGUCGGUUUUGA---ACGuGGGG-GUCG- -5'
33269 3' -55 NC_007605.1 + 50851 0.66 0.936541
Target:  5'- cGGCCgucgGGCUgcGACcccgUGCGCCCgugguggccgCCGGCg -3'
miRNA:   3'- -CCGG----UCGGuuUUGa---ACGUGGG----------GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.