miRNA display CGI


Results 41 - 60 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33269 3' -55 NC_007605.1 + 15806 0.74 0.532871
Target:  5'- cGGCCAGCCGAGccgaccggccccGCgccugGCGCCUCCucggGGCc -3'
miRNA:   3'- -CCGGUCGGUUU------------UGaa---CGUGGGGG----UCG- -5'
33269 3' -55 NC_007605.1 + 18875 0.74 0.532871
Target:  5'- cGGCCAGCCGAGccgaccggccccGCgccugGCGCCUCCucggGGCc -3'
miRNA:   3'- -CCGGUCGGUUU------------UGaa---CGUGGGGG----UCG- -5'
33269 3' -55 NC_007605.1 + 25012 0.74 0.532871
Target:  5'- cGGCCAGCCGAGccgaccggccccGCgccugGCGCCUCCucggGGCc -3'
miRNA:   3'- -CCGGUCGGUUU------------UGaa---CGUGGGGG----UCG- -5'
33269 3' -55 NC_007605.1 + 28081 0.74 0.532871
Target:  5'- cGGCCAGCCGAGccgaccggccccGCgccugGCGCCUCCucggGGCc -3'
miRNA:   3'- -CCGGUCGGUUU------------UGaa---CGUGGGGG----UCG- -5'
33269 3' -55 NC_007605.1 + 34219 0.74 0.532871
Target:  5'- cGGCCAGCCGAGccgaccggccccGCgccugGCGCCUCCucggGGCc -3'
miRNA:   3'- -CCGGUCGGUUU------------UGaa---CGUGGGGG----UCG- -5'
33269 3' -55 NC_007605.1 + 61317 0.74 0.552895
Target:  5'- gGGCCGGCCAAAcgGCgcGCGCggaUCCGGCc -3'
miRNA:   3'- -CCGGUCGGUUU--UGaaCGUGg--GGGUCG- -5'
33269 3' -55 NC_007605.1 + 53333 0.74 0.562993
Target:  5'- gGGCCGGCgAAAuACgccgGCACCCuCUGGCu -3'
miRNA:   3'- -CCGGUCGgUUU-UGaa--CGUGGG-GGUCG- -5'
33269 3' -55 NC_007605.1 + 54352 0.74 0.57009
Target:  5'- aGGCUGGCCucGGACUcgGCGCucuggccuaagaagCCCCAGCu -3'
miRNA:   3'- -CCGGUCGGu-UUUGAa-CGUG--------------GGGGUCG- -5'
33269 3' -55 NC_007605.1 + 142909 0.74 0.583328
Target:  5'- cGGCCAccccccGCCGGAGCgggGCAgCgaCCCAGCg -3'
miRNA:   3'- -CCGGU------CGGUUUUGaa-CGUgG--GGGUCG- -5'
33269 3' -55 NC_007605.1 + 13408 0.74 0.583328
Target:  5'- aGGCCGGCCGGAGg--Ga--CCCCGGCg -3'
miRNA:   3'- -CCGGUCGGUUUUgaaCgugGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 141890 0.74 0.583328
Target:  5'- cGGCCAcccccGCCGGAGCgggGCAgCggaCCCAGCg -3'
miRNA:   3'- -CCGGU-----CGGUUUUGaa-CGUgG---GGGUCG- -5'
33269 3' -55 NC_007605.1 + 16477 0.74 0.583328
Target:  5'- aGGCCGGCCGGAGg--Ga--CCCCGGCg -3'
miRNA:   3'- -CCGGUCGGUUUUgaaCgugGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 19546 0.74 0.583328
Target:  5'- aGGCCGGCCGGAGg--Ga--CCCCGGCg -3'
miRNA:   3'- -CCGGUCGGUUUUgaaCgugGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 22615 0.74 0.583328
Target:  5'- aGGCCGGCCGGAGg--Ga--CCCCGGCg -3'
miRNA:   3'- -CCGGUCGGUUUUgaaCgugGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 25684 0.74 0.583328
Target:  5'- aGGCCGGCCGGAGg--Ga--CCCCGGCg -3'
miRNA:   3'- -CCGGUCGGUUUUgaaCgugGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 28753 0.74 0.583328
Target:  5'- aGGCCGGCCGGAGg--Ga--CCCCGGCg -3'
miRNA:   3'- -CCGGUCGGUUUUgaaCgugGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 31822 0.74 0.583328
Target:  5'- aGGCCGGCCGGAGg--Ga--CCCCGGCg -3'
miRNA:   3'- -CCGGUCGGUUUUgaaCgugGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 34891 0.74 0.583328
Target:  5'- aGGCCGGCCGGAGg--Ga--CCCCGGCg -3'
miRNA:   3'- -CCGGUCGGUUUUgaaCgugGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 151104 0.74 0.583328
Target:  5'- uGGgCGGCCGcAGCcUGC-CCCUCGGCg -3'
miRNA:   3'- -CCgGUCGGUuUUGaACGuGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 159832 0.73 0.593552
Target:  5'- cGCCGccGCCuucACggcGCACCCCCAGUa -3'
miRNA:   3'- cCGGU--CGGuuuUGaa-CGUGGGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.