miRNA display CGI


Results 41 - 60 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33269 3' -55 NC_007605.1 + 19346 0.69 0.84489
Target:  5'- gGGCC-GCCcGGGCUgccggGguCCCuCCGGCu -3'
miRNA:   3'- -CCGGuCGGuUUUGAa----CguGGG-GGUCG- -5'
33269 3' -55 NC_007605.1 + 19433 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 19546 0.74 0.583328
Target:  5'- aGGCCGGCCGGAGg--Ga--CCCCGGCg -3'
miRNA:   3'- -CCGGUCGGUUUUgaaCgugGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 19898 0.7 0.755548
Target:  5'- cGGcCCAGCCc-GACccccggGCGCCCCCAa- -3'
miRNA:   3'- -CC-GGUCGGuuUUGaa----CGUGGGGGUcg -5'
33269 3' -55 NC_007605.1 + 20698 0.66 0.941318
Target:  5'- aGGCCcuGGaCCAAcccGGCccggGC-CCCCCGGUa -3'
miRNA:   3'- -CCGG--UC-GGUU---UUGaa--CGuGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 21071 0.66 0.936541
Target:  5'- -aUCAGCCAGGGCUucaUGCcCUCCuCAGUu -3'
miRNA:   3'- ccGGUCGGUUUUGA---ACGuGGGG-GUCG- -5'
33269 3' -55 NC_007605.1 + 21523 0.7 0.774588
Target:  5'- gGGCCcgagguuggAGCCA--GCggGCACCcgagguCCCAGCa -3'
miRNA:   3'- -CCGG---------UCGGUuuUGaaCGUGG------GGGUCG- -5'
33269 3' -55 NC_007605.1 + 21827 0.68 0.860667
Target:  5'- cGGCCAGCCcAGccgaccggccccACUccggGCGCCUCCucggGGCc -3'
miRNA:   3'- -CCGGUCGGuUU------------UGAa---CGUGGGGG----UCG- -5'
33269 3' -55 NC_007605.1 + 21936 0.67 0.913254
Target:  5'- gGGCCuaGGCCGAcccucugccucccaGACUUaccccaGgGCCaCCCGGCg -3'
miRNA:   3'- -CCGG--UCGGUU--------------UUGAA------CgUGG-GGGUCG- -5'
33269 3' -55 NC_007605.1 + 21944 0.75 0.522956
Target:  5'- cGGCCAGCCGAGcgaccggccccGCgccugGCGCCUCCucggGGCc -3'
miRNA:   3'- -CCGGUCGGUUU-----------UGaa---CGUGGGGG----UCG- -5'
33269 3' -55 NC_007605.1 + 22208 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 22415 0.69 0.84489
Target:  5'- gGGCC-GCCcGGGCUgccggGguCCCuCCGGCu -3'
miRNA:   3'- -CCGGuCGGuUUUGAa----CguGGG-GGUCG- -5'
33269 3' -55 NC_007605.1 + 22502 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 22615 0.74 0.583328
Target:  5'- aGGCCGGCCGGAGg--Ga--CCCCGGCg -3'
miRNA:   3'- -CCGGUCGGUUUUgaaCgugGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 22966 0.7 0.755548
Target:  5'- cGGcCCAGCCc-GACccccggGCGCCCCCAa- -3'
miRNA:   3'- -CC-GGUCGGuuUUGaa----CGUGGGGGUcg -5'
33269 3' -55 NC_007605.1 + 23767 0.66 0.941318
Target:  5'- aGGCCcuGGaCCAAcccGGCccggGC-CCCCCGGUa -3'
miRNA:   3'- -CCGG--UC-GGUU---UUGaa--CGuGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 24140 0.66 0.936541
Target:  5'- -aUCAGCCAGGGCUucaUGCcCUCCuCAGUu -3'
miRNA:   3'- ccGGUCGGUUUUGA---ACGuGGGG-GUCG- -5'
33269 3' -55 NC_007605.1 + 24592 0.7 0.774588
Target:  5'- gGGCCcgagguuggAGCCA--GCggGCACCcgagguCCCAGCa -3'
miRNA:   3'- -CCGG---------UCGGUuuUGaaCGUGG------GGGUCG- -5'
33269 3' -55 NC_007605.1 + 24896 0.68 0.860667
Target:  5'- cGGCCAGCCcAGccgaccggccccACUccggGCGCCUCCucggGGCc -3'
miRNA:   3'- -CCGGUCGGuUU------------UGAa---CGUGGGGG----UCG- -5'
33269 3' -55 NC_007605.1 + 25005 0.67 0.913254
Target:  5'- gGGCCuaGGCCGAcccucugccucccaGACUUaccccaGgGCCaCCCGGCg -3'
miRNA:   3'- -CCGG--UCGGUU--------------UUGAA------CgUGG-GGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.