miRNA display CGI


Results 21 - 40 of 349 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33269 3' -55 NC_007605.1 + 13408 0.74 0.583328
Target:  5'- aGGCCGGCCGGAGg--Ga--CCCCGGCg -3'
miRNA:   3'- -CCGGUCGGUUUUgaaCgugGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 13760 0.7 0.755548
Target:  5'- cGGcCCAGCCc-GACccccggGCGCCCCCAa- -3'
miRNA:   3'- -CC-GGUCGGuuUUGaa----CGUGGGGGUcg -5'
33269 3' -55 NC_007605.1 + 14560 0.66 0.941318
Target:  5'- aGGCCcuGGaCCAAcccGGCccggGC-CCCCCGGUa -3'
miRNA:   3'- -CCGG--UC-GGUU---UUGaa--CGuGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 14934 0.66 0.936541
Target:  5'- -aUCAGCCAGGGCUucaUGCcCUCCuCAGUu -3'
miRNA:   3'- ccGGUCGGUUUUGA---ACGuGGGG-GUCG- -5'
33269 3' -55 NC_007605.1 + 15385 0.7 0.774588
Target:  5'- gGGCCcgagguuggAGCCA--GCggGCACCcgagguCCCAGCa -3'
miRNA:   3'- -CCGG---------UCGGUuuUGaaCGUGG------GGGUCG- -5'
33269 3' -55 NC_007605.1 + 15689 0.68 0.860667
Target:  5'- cGGCCAGCCcAGccgaccggccccACUccggGCGCCUCCucggGGCc -3'
miRNA:   3'- -CCGGUCGGuUU------------UGAa---CGUGGGGG----UCG- -5'
33269 3' -55 NC_007605.1 + 15798 0.67 0.913254
Target:  5'- gGGCCuaGGCCGAcccucugccucccaGACUUaccccaGgGCCaCCCGGCg -3'
miRNA:   3'- -CCGG--UCGGUU--------------UUGAA------CgUGG-GGGUCG- -5'
33269 3' -55 NC_007605.1 + 15806 0.74 0.532871
Target:  5'- cGGCCAGCCGAGccgaccggccccGCgccugGCGCCUCCucggGGCc -3'
miRNA:   3'- -CCGGUCGGUUU------------UGaa---CGUGGGGG----UCG- -5'
33269 3' -55 NC_007605.1 + 16070 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 16277 0.69 0.84489
Target:  5'- gGGCC-GCCcGGGCUgccggGguCCCuCCGGCu -3'
miRNA:   3'- -CCGGuCGGuUUUGAa----CguGGG-GGUCG- -5'
33269 3' -55 NC_007605.1 + 16364 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 16477 0.74 0.583328
Target:  5'- aGGCCGGCCGGAGg--Ga--CCCCGGCg -3'
miRNA:   3'- -CCGGUCGGUUUUgaaCgugGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 16829 0.7 0.755548
Target:  5'- cGGcCCAGCCc-GACccccggGCGCCCCCAa- -3'
miRNA:   3'- -CC-GGUCGGuuUUGaa----CGUGGGGGUcg -5'
33269 3' -55 NC_007605.1 + 17629 0.66 0.941318
Target:  5'- aGGCCcuGGaCCAAcccGGCccggGC-CCCCCGGUa -3'
miRNA:   3'- -CCGG--UC-GGUU---UUGaa--CGuGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 18002 0.66 0.936541
Target:  5'- -aUCAGCCAGGGCUucaUGCcCUCCuCAGUu -3'
miRNA:   3'- ccGGUCGGUUUUGA---ACGuGGGG-GUCG- -5'
33269 3' -55 NC_007605.1 + 18454 0.7 0.774588
Target:  5'- gGGCCcgagguuggAGCCA--GCggGCACCcgagguCCCAGCa -3'
miRNA:   3'- -CCGG---------UCGGUuuUGaaCGUGG------GGGUCG- -5'
33269 3' -55 NC_007605.1 + 18758 0.68 0.860667
Target:  5'- cGGCCAGCCcAGccgaccggccccACUccggGCGCCUCCucggGGCc -3'
miRNA:   3'- -CCGGUCGGuUU------------UGAa---CGUGGGGG----UCG- -5'
33269 3' -55 NC_007605.1 + 18867 0.67 0.913254
Target:  5'- gGGCCuaGGCCGAcccucugccucccaGACUUaccccaGgGCCaCCCGGCg -3'
miRNA:   3'- -CCGG--UCGGUU--------------UUGAA------CgUGG-GGGUCG- -5'
33269 3' -55 NC_007605.1 + 18875 0.74 0.532871
Target:  5'- cGGCCAGCCGAGccgaccggccccGCgccugGCGCCUCCucggGGCc -3'
miRNA:   3'- -CCGGUCGGUUU------------UGaa---CGUGGGGG----UCG- -5'
33269 3' -55 NC_007605.1 + 19139 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.