miRNA display CGI


Results 1 - 20 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33269 3' -55 NC_007605.1 + 2390 0.68 0.87561
Target:  5'- gGGCCGGCUu---CUaUGCACCUCgaAGCc -3'
miRNA:   3'- -CCGGUCGGuuuuGA-ACGUGGGGg-UCG- -5'
33269 3' -55 NC_007605.1 + 2595 0.66 0.926266
Target:  5'- cGUCGGCCA--GCUguCugCCaCCAGCa -3'
miRNA:   3'- cCGGUCGGUuuUGAacGugGG-GGUCG- -5'
33269 3' -55 NC_007605.1 + 2958 0.75 0.474554
Target:  5'- aGCCGGCCAcGACcgGCACCCCgCuuuuGGCa -3'
miRNA:   3'- cCGGUCGGUuUUGaaCGUGGGG-G----UCG- -5'
33269 3' -55 NC_007605.1 + 3057 0.7 0.774588
Target:  5'- uGUCAaguGCCugguGCUUGaugGCCCCCAGCu -3'
miRNA:   3'- cCGGU---CGGuuu-UGAACg--UGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 3179 0.69 0.81105
Target:  5'- gGGCCGGCCAGGGCcacgGgACCUggaaugCAGCa -3'
miRNA:   3'- -CCGGUCGGUUUUGaa--CgUGGGg-----GUCG- -5'
33269 3' -55 NC_007605.1 + 4261 0.71 0.726185
Target:  5'- aGGCCgAGCCAAAggucaGCUU-CACgCCCAGg -3'
miRNA:   3'- -CCGG-UCGGUUU-----UGAAcGUGgGGGUCg -5'
33269 3' -55 NC_007605.1 + 4850 0.72 0.68593
Target:  5'- uGGCCGuGCUA-----UGCGCCCCgGGCa -3'
miRNA:   3'- -CCGGU-CGGUuuugaACGUGGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 5074 0.66 0.936541
Target:  5'- aGGCC-GCCAggAGGCUUuCaugGCCCCUGGUg -3'
miRNA:   3'- -CCGGuCGGU--UUUGAAcG---UGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 5203 0.65 0.950155
Target:  5'- cGGCCuGCCAGGGCagag-UCCCUGGCc -3'
miRNA:   3'- -CCGGuCGGUUUUGaacguGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 5326 1.14 0.001754
Target:  5'- aGGCCAGCCAAAACUUGCACCCCCAGCu -3'
miRNA:   3'- -CCGGUCGGUUUUGAACGUGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 5536 0.72 0.696084
Target:  5'- aGGCCcaGGCaCGAGcCUUGCACCCaacaaGGCa -3'
miRNA:   3'- -CCGG--UCG-GUUUuGAACGUGGGgg---UCG- -5'
33269 3' -55 NC_007605.1 + 10831 0.67 0.920766
Target:  5'- cGCCGGCauu--CUUGUGCCCCUucccGCc -3'
miRNA:   3'- cCGGUCGguuuuGAACGUGGGGGu---CG- -5'
33269 3' -55 NC_007605.1 + 10872 0.69 0.828331
Target:  5'- aGGCUAGUguuuuAAACaUGCACCCuaggCCAGCc -3'
miRNA:   3'- -CCGGUCGgu---UUUGaACGUGGG----GGUCG- -5'
33269 3' -55 NC_007605.1 + 12316 0.7 0.774588
Target:  5'- gGGCCcgagguuggAGCCA--GCggGCACCcgagguCCCAGCa -3'
miRNA:   3'- -CCGG---------UCGGUuuUGaaCGUGG------GGGUCG- -5'
33269 3' -55 NC_007605.1 + 12620 0.68 0.860667
Target:  5'- cGGCCAGCCcAGccgaccggccccACUccggGCGCCUCCucggGGCc -3'
miRNA:   3'- -CCGGUCGGuUU------------UGAa---CGUGGGGG----UCG- -5'
33269 3' -55 NC_007605.1 + 12729 0.67 0.913254
Target:  5'- gGGCCuaGGCCGAcccucugccucccaGACUUaccccaGgGCCaCCCGGCg -3'
miRNA:   3'- -CCGG--UCGGUU--------------UUGAA------CgUGG-GGGUCG- -5'
33269 3' -55 NC_007605.1 + 12737 0.74 0.532871
Target:  5'- cGGCCAGCCGAGccgaccggccccGCgccugGCGCCUCCucggGGCc -3'
miRNA:   3'- -CCGGUCGGUUU------------UGaa---CGUGGGGG----UCG- -5'
33269 3' -55 NC_007605.1 + 13001 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 13208 0.69 0.84489
Target:  5'- gGGCC-GCCcGGGCUgccggGguCCCuCCGGCu -3'
miRNA:   3'- -CCGGuCGGuUUUGAa----CguGGG-GGUCG- -5'
33269 3' -55 NC_007605.1 + 13295 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.