miRNA display CGI


Results 1 - 20 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33269 3' -55 NC_007605.1 + 158829 0.78 0.360628
Target:  5'- gGGCCuGGCCGGGGCUgaccGCGuCCgCCCGGCg -3'
miRNA:   3'- -CCGG-UCGGUUUUGAa---CGU-GG-GGGUCG- -5'
33269 3' -55 NC_007605.1 + 25277 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 25571 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 28346 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 28640 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 31415 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 31709 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 34484 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 34778 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 22502 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 22208 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 19433 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 143229 0.83 0.180182
Target:  5'- gGGCCGGCUggGAggugUGCACCCCCcgAGCg -3'
miRNA:   3'- -CCGGUCGGuuUUga--ACGUGGGGG--UCG- -5'
33269 3' -55 NC_007605.1 + 53701 0.83 0.189504
Target:  5'- aGGuUCAGCCAGGcACccGCGCCCCCAGCu -3'
miRNA:   3'- -CC-GGUCGGUUU-UGaaCGUGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 151423 0.79 0.300618
Target:  5'- cGGgCAGCCGGAGCUUGUGguacugucCCUCCGGCa -3'
miRNA:   3'- -CCgGUCGGUUUUGAACGU--------GGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 13001 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 13295 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 16070 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 16364 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 19139 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.