Results 1 - 20 of 349 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33269 | 3' | -55 | NC_007605.1 | + | 5326 | 1.14 | 0.001754 |
Target: 5'- aGGCCAGCCAAAACUUGCACCCCCAGCu -3' miRNA: 3'- -CCGGUCGGUUUUGAACGUGGGGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 142706 | 0.73 | 0.624366 |
Target: 5'- cGGCCAccccccGCCGGAGCgggGCAgCggaCCCAGCg -3' miRNA: 3'- -CCGGU------CGGUUUUGaa-CGUgG---GGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 142502 | 0.73 | 0.624366 |
Target: 5'- cGGCCAccccccGCCGGAGCgggGCAgCggaCCCAGCg -3' miRNA: 3'- -CCGGU------CGGUUUUGaa-CGUgG---GGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 56748 | 0.65 | 0.950155 |
Target: 5'- uGCCGguGCUAAGAUgcugGCugaaauUCCCCAGCu -3' miRNA: 3'- cCGGU--CGGUUUUGaa--CGu-----GGGGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 63304 | 0.79 | 0.307679 |
Target: 5'- -aCCAGCUGAAGCUccccccuccacUGcCACCCCCGGCg -3' miRNA: 3'- ccGGUCGGUUUUGA-----------AC-GUGGGGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 74789 | 0.77 | 0.419606 |
Target: 5'- gGGCCGGCCAAAGa--GCcagaGCCCgCAGCa -3' miRNA: 3'- -CCGGUCGGUUUUgaaCG----UGGGgGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 61317 | 0.74 | 0.552895 |
Target: 5'- gGGCCGGCCAAAcgGCgcGCGCggaUCCGGCc -3' miRNA: 3'- -CCGGUCGGUUU--UGaaCGUGg--GGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 53333 | 0.74 | 0.562993 |
Target: 5'- gGGCCGGCgAAAuACgccgGCACCCuCUGGCu -3' miRNA: 3'- -CCGGUCGgUUU-UGaa--CGUGGG-GGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 141890 | 0.74 | 0.583328 |
Target: 5'- cGGCCAcccccGCCGGAGCgggGCAgCggaCCCAGCg -3' miRNA: 3'- -CCGGU-----CGGUUUUGaa-CGUgG---GGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 142808 | 0.73 | 0.624366 |
Target: 5'- cGGCCAccccccGCCGGAGCgggGCAgCggaCCCAGCg -3' miRNA: 3'- -CCGGU------CGGUUUUGaa-CGUgG---GGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 143215 | 0.73 | 0.624366 |
Target: 5'- cGGCCAccccccGCCGGAGCgggGCAgCggaCCCAGCg -3' miRNA: 3'- -CCGGU------CGGUUUUGaa-CGUgG---GGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 142909 | 0.74 | 0.583328 |
Target: 5'- cGGCCAccccccGCCGGAGCgggGCAgCgaCCCAGCg -3' miRNA: 3'- -CCGGU------CGGUUUUGaa-CGUgG--GGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 59774 | 0.84 | 0.170834 |
Target: 5'- gGGCCAGCCGGGACcUGUcaccaccGCCCCaCGGCa -3' miRNA: 3'- -CCGGUCGGUUUUGaACG-------UGGGG-GUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 143113 | 0.73 | 0.624366 |
Target: 5'- cGGCCAccccccGCCGGAGCgggGCAgCggaCCCAGCg -3' miRNA: 3'- -CCGGU------CGGUUUUGaa-CGUgG---GGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 72153 | 0.81 | 0.242668 |
Target: 5'- aGGCCAGUCAAGACa-GCACUacauCCCAGCu -3' miRNA: 3'- -CCGGUCGGUUUUGaaCGUGG----GGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 54352 | 0.74 | 0.57009 |
Target: 5'- aGGCUGGCCucGGACUcgGCGCucuggccuaagaagCCCCAGCu -3' miRNA: 3'- -CCGGUCGGu-UUUGAa-CGUG--------------GGGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 143011 | 0.73 | 0.624366 |
Target: 5'- cGGCCAccccccGCCGGAGCgggGCAgCggaCCCAGCg -3' miRNA: 3'- -CCGGU------CGGUUUUGaa-CGUgG---GGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 142604 | 0.73 | 0.624366 |
Target: 5'- cGGCCAccccccGCCGGAGCgggGCAgCggaCCCAGCg -3' miRNA: 3'- -CCGGU------CGGUUUUGaa-CGUgG---GGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 158335 | 0.8 | 0.273629 |
Target: 5'- cGCCAGCCAgacgGAGCUcuaUGaCGCCCCCGGg -3' miRNA: 3'- cCGGUCGGU----UUUGA---AC-GUGGGGGUCg -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 2958 | 0.75 | 0.474554 |
Target: 5'- aGCCGGCCAcGACcgGCACCCCgCuuuuGGCa -3' miRNA: 3'- cCGGUCGGUuUUGaaCGUGGGG-G----UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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