Results 1 - 20 of 349 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33269 | 3' | -55 | NC_007605.1 | + | 56600 | 0.65 | 0.950155 |
Target: 5'- uGGCCAGggAcgGCagGCagGCCUCCAGCu -3' miRNA: 3'- -CCGGUCggUuuUGaaCG--UGGGGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 126090 | 0.65 | 0.950155 |
Target: 5'- cGGacCCGGCCcgGAGACUggugGC-CCUCCuGCg -3' miRNA: 3'- -CC--GGUCGG--UUUUGAa---CGuGGGGGuCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 90628 | 0.65 | 0.950155 |
Target: 5'- cGGCCacagcacacaaGGCaaaGGAGCUUGCGauggccCUCCCAGg -3' miRNA: 3'- -CCGG-----------UCGg--UUUUGAACGU------GGGGGUCg -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 5203 | 0.65 | 0.950155 |
Target: 5'- cGGCCuGCCAGGGCagag-UCCCUGGCc -3' miRNA: 3'- -CCGGuCGGUUUUGaacguGGGGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 111395 | 0.65 | 0.950155 |
Target: 5'- uGGCgCAG---GGACUcuaagGCACCCCgAGCa -3' miRNA: 3'- -CCG-GUCgguUUUGAa----CGUGGGGgUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 76698 | 0.65 | 0.950155 |
Target: 5'- --aCAGCCGAGA-UUGCugCCCCu-- -3' miRNA: 3'- ccgGUCGGUUUUgAACGugGGGGucg -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 56748 | 0.65 | 0.950155 |
Target: 5'- uGCCGguGCUAAGAUgcugGCugaaauUCCCCAGCu -3' miRNA: 3'- cCGGU--CGGUUUUGaa--CGu-----GGGGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 150760 | 0.65 | 0.950155 |
Target: 5'- -cCCAGCCGAGGCc-GCGCCagagcagagCCCGGg -3' miRNA: 3'- ccGGUCGGUUUUGaaCGUGG---------GGGUCg -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 71947 | 0.65 | 0.950155 |
Target: 5'- gGGCUAGCUggGAUguagUGCugucuugacuGgCCUCAGCc -3' miRNA: 3'- -CCGGUCGGuuUUGa---ACG----------UgGGGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 105845 | 0.65 | 0.950155 |
Target: 5'- aGGaaGGCgUAGAGCc--CGCCCCCGGCc -3' miRNA: 3'- -CCggUCG-GUUUUGaacGUGGGGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 55062 | 0.65 | 0.950155 |
Target: 5'- cGGCCuccaggcGCC-AGGCcUGCACCUCCuucugucugAGCu -3' miRNA: 3'- -CCGGu------CGGuUUUGaACGUGGGGG---------UCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 61969 | 0.66 | 0.936541 |
Target: 5'- gGGCaCAGCCGcGACgggggGCGuuuguCCCCC-GCu -3' miRNA: 3'- -CCG-GUCGGUuUUGaa---CGU-----GGGGGuCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 27209 | 0.66 | 0.936541 |
Target: 5'- -aUCAGCCAGGGCUucaUGCcCUCCuCAGUu -3' miRNA: 3'- ccGGUCGGUUUUGA---ACGuGGGG-GUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 30278 | 0.66 | 0.936541 |
Target: 5'- -aUCAGCCAGGGCUucaUGCcCUCCuCAGUu -3' miRNA: 3'- ccGGUCGGUUUUGA---ACGuGGGG-GUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 56482 | 0.66 | 0.936541 |
Target: 5'- aGGUCGGUCAGGcgucuGCggGcCGCCUCCAGg -3' miRNA: 3'- -CCGGUCGGUUU-----UGaaC-GUGGGGGUCg -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 166403 | 0.66 | 0.941318 |
Target: 5'- gGGaCaacaGGUCAAAGuuCUuuguUGaCACCCCCAGCg -3' miRNA: 3'- -CC-Gg---UCGGUUUU--GA----AC-GUGGGGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 84927 | 0.66 | 0.940382 |
Target: 5'- uGGCCAauGCCccuGCgaccuaucccuaUGCGCCCCUuGCg -3' miRNA: 3'- -CCGGU--CGGuuuUGa-----------ACGUGGGGGuCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 154883 | 0.66 | 0.936541 |
Target: 5'- gGGUC-GCCuGAcCUcGCagacGCCCCCAGCc -3' miRNA: 3'- -CCGGuCGGuUUuGAaCG----UGGGGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 160669 | 0.66 | 0.936541 |
Target: 5'- gGGuCCAGCCGG----UGCACaCgCUCAGCu -3' miRNA: 3'- -CC-GGUCGGUUuugaACGUG-G-GGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 96836 | 0.66 | 0.936541 |
Target: 5'- uGGUgAGCCu-GAC--GUGCCCCCGGg -3' miRNA: 3'- -CCGgUCGGuuUUGaaCGUGGGGGUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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