miRNA display CGI


Results 1 - 20 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33269 3' -55 NC_007605.1 + 171377 0.7 0.755548
Target:  5'- gGGCgGGgaCAGAgagGCggucGCGCCCCCGGCc -3'
miRNA:   3'- -CCGgUCg-GUUU---UGaa--CGUGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 170839 0.7 0.755548
Target:  5'- gGGCgGGgaCAGAgagGCggucGCGCCCCCGGCc -3'
miRNA:   3'- -CCGgUCg-GUUU---UGaa--CGUGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 170317 0.7 0.755548
Target:  5'- gGGCgGGgaCAGAgagGCggucGCGCCCCCGGCc -3'
miRNA:   3'- -CCGgUCg-GUUU---UGaa--CGUGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 169779 0.7 0.755548
Target:  5'- gGGCgGGgaCAGAgagGCggucGCGCCCCCGGCc -3'
miRNA:   3'- -CCGgUCg-GUUU---UGaa--CGUGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 169294 0.72 0.665495
Target:  5'- uGGCCAccgcauucCCAcAGCUUGC-CCCCCGGg -3'
miRNA:   3'- -CCGGUc-------GGUuUUGAACGuGGGGGUCg -5'
33269 3' -55 NC_007605.1 + 167937 0.67 0.915024
Target:  5'- gGGCCAuuGUCAGGAC---CACCUCCAGg -3'
miRNA:   3'- -CCGGU--CGGUUUUGaacGUGGGGGUCg -5'
33269 3' -55 NC_007605.1 + 167438 0.69 0.827483
Target:  5'- uGCCAGUUAAggugauuAGCUaagGCAUUCCCAGUa -3'
miRNA:   3'- cCGGUCGGUU-------UUGAa--CGUGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 166806 0.68 0.889674
Target:  5'- aGGCCgcaGGCagAGGAC-UGCugCUCUAGCa -3'
miRNA:   3'- -CCGG---UCGg-UUUUGaACGugGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 166403 0.66 0.941318
Target:  5'- gGGaCaacaGGUCAAAGuuCUuuguUGaCACCCCCAGCg -3'
miRNA:   3'- -CC-Gg---UCGGUUUU--GA----AC-GUGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 164948 0.71 0.70316
Target:  5'- aGGCCAGCCAAGuCUacagauucuguguuUGUGaggaCCCCGGUc -3'
miRNA:   3'- -CCGGUCGGUUUuGA--------------ACGUg---GGGGUCG- -5'
33269 3' -55 NC_007605.1 + 164346 0.72 0.644951
Target:  5'- gGGCCAGgUAGugGGCgauUGCCCCCAGCa -3'
miRNA:   3'- -CCGGUCgGUU--UUGaacGUGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 163484 0.71 0.726185
Target:  5'- cGCCAGCCcGGugUacaGCGCCUCguGCa -3'
miRNA:   3'- cCGGUCGGuUUugAa--CGUGGGGguCG- -5'
33269 3' -55 NC_007605.1 + 163434 0.68 0.889674
Target:  5'- cGGCCAGCCucaacuacGACUcGUGgCCCCuGUu -3'
miRNA:   3'- -CCGGUCGGuu------UUGAaCGUgGGGGuCG- -5'
33269 3' -55 NC_007605.1 + 163254 0.77 0.393616
Target:  5'- aGGCUGGCCGGGGuCUcgUGCgagGCCUCCAGCa -3'
miRNA:   3'- -CCGGUCGGUUUU-GA--ACG---UGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 162526 0.69 0.84489
Target:  5'- -cCCAGCCGAGACa-GC-CgCUCCAGCa -3'
miRNA:   3'- ccGGUCGGUUUUGaaCGuG-GGGGUCG- -5'
33269 3' -55 NC_007605.1 + 161272 0.75 0.484062
Target:  5'- -cCCGGCCu--GCUUGCGCagCCCAGCc -3'
miRNA:   3'- ccGGUCGGuuuUGAACGUGg-GGGUCG- -5'
33269 3' -55 NC_007605.1 + 160899 0.68 0.87561
Target:  5'- cGGCguaCAGCCAGG---UGUACgCCCUGGCg -3'
miRNA:   3'- -CCG---GUCGGUUUugaACGUG-GGGGUCG- -5'
33269 3' -55 NC_007605.1 + 160879 0.67 0.920202
Target:  5'- cGGCuCGGCCAcgcugauAAAgUUGUccugggcuGCCCCgGGCc -3'
miRNA:   3'- -CCG-GUCGGU-------UUUgAACG--------UGGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 160791 0.77 0.419606
Target:  5'- uGGCCAGaCGGcGCUUGCgucuGCCCCCGGa -3'
miRNA:   3'- -CCGGUCgGUUuUGAACG----UGGGGGUCg -5'
33269 3' -55 NC_007605.1 + 160690 0.68 0.882755
Target:  5'- aGGCCucuGCCGc-GCUgcuCGCCCCUGGUa -3'
miRNA:   3'- -CCGGu--CGGUuuUGAac-GUGGGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.