miRNA display CGI


Results 21 - 40 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33269 3' -55 NC_007605.1 + 160669 0.66 0.936541
Target:  5'- gGGuCCAGCCGG----UGCACaCgCUCAGCu -3'
miRNA:   3'- -CC-GGUCGGUUuugaACGUG-G-GGGUCG- -5'
33269 3' -55 NC_007605.1 + 160619 0.69 0.836704
Target:  5'- cGGCCAGCaggccGGCguugcGCACCaCCgCAGCc -3'
miRNA:   3'- -CCGGUCGguu--UUGaa---CGUGG-GG-GUCG- -5'
33269 3' -55 NC_007605.1 + 159832 0.73 0.593552
Target:  5'- cGCCGccGCCuucACggcGCACCCCCAGUa -3'
miRNA:   3'- cCGGU--CGGuuuUGaa-CGUGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 159757 0.7 0.755548
Target:  5'- aGGUgAGUCAGc-CUUGCcCCCgCCAGCg -3'
miRNA:   3'- -CCGgUCGGUUuuGAACGuGGG-GGUCG- -5'
33269 3' -55 NC_007605.1 + 159693 0.69 0.81105
Target:  5'- cGGCCGGCUggGGCacgagaGCccgGCCCguCCGGCg -3'
miRNA:   3'- -CCGGUCGGuuUUGaa----CG---UGGG--GGUCG- -5'
33269 3' -55 NC_007605.1 + 159514 0.72 0.665495
Target:  5'- aGCCGGCCGGg----GCACCUCCGGg -3'
miRNA:   3'- cCGGUCGGUUuugaaCGUGGGGGUCg -5'
33269 3' -55 NC_007605.1 + 159400 0.7 0.774588
Target:  5'- cGCCAGgCAGGACUgcagcuugGCcagACCCUCGGUg -3'
miRNA:   3'- cCGGUCgGUUUUGAa-------CG---UGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 159327 0.68 0.889674
Target:  5'- gGGCCAGCUcccaguAGACcacGUcCCCCCAGa -3'
miRNA:   3'- -CCGGUCGGu-----UUUGaa-CGuGGGGGUCg -5'
33269 3' -55 NC_007605.1 + 159020 0.71 0.716221
Target:  5'- cGGUCAGCCccGGCcagGCccuGCCCCCGGa -3'
miRNA:   3'- -CCGGUCGGuuUUGaa-CG---UGGGGGUCg -5'
33269 3' -55 NC_007605.1 + 158829 0.78 0.360628
Target:  5'- gGGCCuGGCCGGGGCUgaccGCGuCCgCCCGGCg -3'
miRNA:   3'- -CCGG-UCGGUUUUGAa---CGU-GG-GGGUCG- -5'
33269 3' -55 NC_007605.1 + 158815 0.66 0.936541
Target:  5'- uGCgCAGaccCCAGAGCagcccGCACCCCCcGCc -3'
miRNA:   3'- cCG-GUC---GGUUUUGaa---CGUGGGGGuCG- -5'
33269 3' -55 NC_007605.1 + 158335 0.8 0.273629
Target:  5'- cGCCAGCCAgacgGAGCUcuaUGaCGCCCCCGGg -3'
miRNA:   3'- cCGGUCGGU----UUUGA---AC-GUGGGGGUCg -5'
33269 3' -55 NC_007605.1 + 156687 0.71 0.735083
Target:  5'- aGGCCGGCgAuguuuugcgccugGAAgUUGUACUCCCGGa -3'
miRNA:   3'- -CCGGUCGgU-------------UUUgAACGUGGGGGUCg -5'
33269 3' -55 NC_007605.1 + 155796 0.66 0.931525
Target:  5'- aGGCCAGCaccuucGACcgcaGgACCCCCuGCc -3'
miRNA:   3'- -CCGGUCGguu---UUGaa--CgUGGGGGuCG- -5'
33269 3' -55 NC_007605.1 + 155715 0.69 0.836704
Target:  5'- cGCUGGCCccaucggcCUUGCGCCggCCCAGUa -3'
miRNA:   3'- cCGGUCGGuuuu----GAACGUGG--GGGUCG- -5'
33269 3' -55 NC_007605.1 + 155545 0.66 0.945855
Target:  5'- cGCCGcGCCAucccc--CGCCUCCAGCa -3'
miRNA:   3'- cCGGU-CGGUuuugaacGUGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 154883 0.66 0.936541
Target:  5'- gGGUC-GCCuGAcCUcGCagacGCCCCCAGCc -3'
miRNA:   3'- -CCGGuCGGuUUuGAaCG----UGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 154661 0.67 0.896364
Target:  5'- uGCCgAGCC---GCcUGCGCCCCUcggGGCc -3'
miRNA:   3'- cCGG-UCGGuuuUGaACGUGGGGG---UCG- -5'
33269 3' -55 NC_007605.1 + 154475 0.66 0.941318
Target:  5'- aGGCUAGCCG--GCcUGCGCCCg---- -3'
miRNA:   3'- -CCGGUCGGUuuUGaACGUGGGggucg -5'
33269 3' -55 NC_007605.1 + 154291 0.74 0.532871
Target:  5'- aGGCCGGCUAGccugUGCucuuCUCCCGGCg -3'
miRNA:   3'- -CCGGUCGGUUuugaACGu---GGGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.