miRNA display CGI


Results 21 - 40 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33269 3' -55 NC_007605.1 + 13001 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 19433 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 22208 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 22502 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 25277 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 25571 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 163254 0.77 0.393616
Target:  5'- aGGCUGGCCGGGGuCUcgUGCgagGCCUCCAGCa -3'
miRNA:   3'- -CCGGUCGGUUUU-GA--ACG---UGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 53369 0.77 0.402163
Target:  5'- aGCCAGCCGAGGCcccaaGCgccagGCCCCUGGCa -3'
miRNA:   3'- cCGGUCGGUUUUGaa---CG-----UGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 74789 0.77 0.419606
Target:  5'- gGGCCGGCCAAAGa--GCcagaGCCCgCAGCa -3'
miRNA:   3'- -CCGGUCGGUUUUgaaCG----UGGGgGUCG- -5'
33269 3' -55 NC_007605.1 + 160791 0.77 0.419606
Target:  5'- uGGCCAGaCGGcGCUUGCgucuGCCCCCGGa -3'
miRNA:   3'- -CCGGUCgGUUuUGAACG----UGGGGGUCg -5'
33269 3' -55 NC_007605.1 + 73734 0.76 0.455824
Target:  5'- cGGCCgaGGCCAGGGgaagGCGCCCCCuguaGGCg -3'
miRNA:   3'- -CCGG--UCGGUUUUgaa-CGUGGGGG----UCG- -5'
33269 3' -55 NC_007605.1 + 72605 0.76 0.46514
Target:  5'- cGG-CAGCCGGA---UGCACCgCCCGGCg -3'
miRNA:   3'- -CCgGUCGGUUUugaACGUGG-GGGUCG- -5'
33269 3' -55 NC_007605.1 + 120297 0.75 0.474554
Target:  5'- gGGCCaAGCCAAGggGCccugGCACCUCCGGg -3'
miRNA:   3'- -CCGG-UCGGUUU--UGaa--CGUGGGGGUCg -5'
33269 3' -55 NC_007605.1 + 2958 0.75 0.474554
Target:  5'- aGCCGGCCAcGACcgGCACCCCgCuuuuGGCa -3'
miRNA:   3'- cCGGUCGGUuUUGaaCGUGGGG-G----UCG- -5'
33269 3' -55 NC_007605.1 + 161272 0.75 0.484062
Target:  5'- -cCCGGCCu--GCUUGCGCagCCCAGCc -3'
miRNA:   3'- ccGGUCGGuuuUGAACGUGg-GGGUCG- -5'
33269 3' -55 NC_007605.1 + 94980 0.75 0.493661
Target:  5'- gGGCCAGCCcgggGGGACcuccccUGCuguuCCCCCAGUu -3'
miRNA:   3'- -CCGGUCGG----UUUUGa-----ACGu---GGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 21944 0.75 0.522956
Target:  5'- cGGCCAGCCGAGcgaccggccccGCgccugGCGCCUCCucggGGCc -3'
miRNA:   3'- -CCGGUCGGUUU-----------UGaa---CGUGGGGG----UCG- -5'
33269 3' -55 NC_007605.1 + 31150 0.74 0.532871
Target:  5'- cGGCCAGCCGAGccgaccggccccGCgccugGCGCCUCCucggGGCc -3'
miRNA:   3'- -CCGGUCGGUUU------------UGaa---CGUGGGGG----UCG- -5'
33269 3' -55 NC_007605.1 + 154291 0.74 0.532871
Target:  5'- aGGCCGGCUAGccugUGCucuuCUCCCGGCg -3'
miRNA:   3'- -CCGGUCGGUUuugaACGu---GGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 12737 0.74 0.532871
Target:  5'- cGGCCAGCCGAGccgaccggccccGCgccugGCGCCUCCucggGGCc -3'
miRNA:   3'- -CCGGUCGGUUU------------UGaa---CGUGGGGG----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.