miRNA display CGI


Results 21 - 40 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33269 3' -55 NC_007605.1 + 81656 0.66 0.945855
Target:  5'- aGGcCCAGCCGGGGCggguacuggUGCACaCgCCAcucGCc -3'
miRNA:   3'- -CC-GGUCGGUUUUGa--------ACGUG-GgGGU---CG- -5'
33269 3' -55 NC_007605.1 + 38764 0.66 0.945855
Target:  5'- gGGgCAGCCGGggUUccugGCGCUCCgGGg -3'
miRNA:   3'- -CCgGUCGGUUuuGAa---CGUGGGGgUCg -5'
33269 3' -55 NC_007605.1 + 39138 0.66 0.945855
Target:  5'- gGGgCAGCCGGggUUccugGCGCUCCgGGg -3'
miRNA:   3'- -CCgGUCGGUUuuGAa---CGUGGGGgUCg -5'
33269 3' -55 NC_007605.1 + 38389 0.66 0.945855
Target:  5'- gGGgCAGCCGGggUUccugGCGCUCCgGGg -3'
miRNA:   3'- -CCgGUCGGUUuuGAa---CGUGGGGgUCg -5'
33269 3' -55 NC_007605.1 + 38264 0.66 0.945855
Target:  5'- gGGgCAGCCGGggUUccugGCGCUCCgGGg -3'
miRNA:   3'- -CCgGUCGGUUuuGAa---CGUGGGGgUCg -5'
33269 3' -55 NC_007605.1 + 39638 0.66 0.945855
Target:  5'- gGGgCAGCCGGggUUccugGCGCUCCgGGg -3'
miRNA:   3'- -CCgGUCGGUUuuGAa---CGUGGGGgUCg -5'
33269 3' -55 NC_007605.1 + 39513 0.66 0.945855
Target:  5'- gGGgCAGCCGGggUUccugGCGCUCCgGGg -3'
miRNA:   3'- -CCgGUCGGUUuuGAa---CGUGGGGgUCg -5'
33269 3' -55 NC_007605.1 + 20698 0.66 0.941318
Target:  5'- aGGCCcuGGaCCAAcccGGCccggGC-CCCCCGGUa -3'
miRNA:   3'- -CCGG--UC-GGUU---UUGaa--CGuGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 32973 0.66 0.941318
Target:  5'- aGGCCcuGGaCCAAcccGGCccggGC-CCCCCGGUa -3'
miRNA:   3'- -CCGG--UC-GGUU---UUGaa--CGuGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 29905 0.66 0.941318
Target:  5'- aGGCCcuGGaCCAAcccGGCccggGC-CCCCCGGUa -3'
miRNA:   3'- -CCGG--UC-GGUU---UUGaa--CGuGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 26836 0.66 0.941318
Target:  5'- aGGCCcuGGaCCAAcccGGCccggGC-CCCCCGGUa -3'
miRNA:   3'- -CCGG--UC-GGUU---UUGaa--CGuGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 39470 0.66 0.941318
Target:  5'- cGGCUGcccccggagcGCCAGGAaccccgGCugCCCCAGg -3'
miRNA:   3'- -CCGGU----------CGGUUUUgaa---CGugGGGGUCg -5'
33269 3' -55 NC_007605.1 + 39345 0.66 0.941318
Target:  5'- cGGCUGcccccggagcGCCAGGAaccccgGCugCCCCAGg -3'
miRNA:   3'- -CCGGU----------CGGUUUUgaa---CGugGGGGUCg -5'
33269 3' -55 NC_007605.1 + 38596 0.66 0.941318
Target:  5'- cGGCUGcccccggagcGCCAGGAaccccgGCugCCCCAGg -3'
miRNA:   3'- -CCGGU----------CGGUUUUgaa---CGugGGGGUCg -5'
33269 3' -55 NC_007605.1 + 17629 0.66 0.941318
Target:  5'- aGGCCcuGGaCCAAcccGGCccggGC-CCCCCGGUa -3'
miRNA:   3'- -CCGG--UC-GGUU---UUGaa--CGuGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 38971 0.66 0.941318
Target:  5'- cGGCUGcccccggagcGCCAGGAaccccgGCugCCCCAGg -3'
miRNA:   3'- -CCGGU----------CGGUUUUgaa---CGugGGGGUCg -5'
33269 3' -55 NC_007605.1 + 38721 0.66 0.941318
Target:  5'- cGGCUGcccccggagcGCCAGGAaccccgGCugCCCCAGg -3'
miRNA:   3'- -CCGGU----------CGGUUUUgaa---CGugGGGGUCg -5'
33269 3' -55 NC_007605.1 + 38846 0.66 0.941318
Target:  5'- cGGCUGcccccggagcGCCAGGAaccccgGCugCCCCAGg -3'
miRNA:   3'- -CCGGU----------CGGUUUUgaa---CGugGGGGUCg -5'
33269 3' -55 NC_007605.1 + 39220 0.66 0.941318
Target:  5'- cGGCUGcccccggagcGCCAGGAaccccgGCugCCCCAGg -3'
miRNA:   3'- -CCGGU----------CGGUUUUgaa---CGugGGGGUCg -5'
33269 3' -55 NC_007605.1 + 23767 0.66 0.941318
Target:  5'- aGGCCcuGGaCCAAcccGGCccggGC-CCCCCGGUa -3'
miRNA:   3'- -CCGG--UC-GGUU---UUGaa--CGuGGGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.