miRNA display CGI


Results 41 - 60 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33269 3' -55 NC_007605.1 + 13295 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 13001 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 151423 0.79 0.300618
Target:  5'- cGGgCAGCCGGAGCUUGUGguacugucCCUCCGGCa -3'
miRNA:   3'- -CCgGUCGGUUUUGAACGU--------GGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 53701 0.83 0.189504
Target:  5'- aGGuUCAGCCAGGcACccGCGCCCCCAGCu -3'
miRNA:   3'- -CC-GGUCGGUUU-UGaaCGUGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 143229 0.83 0.180182
Target:  5'- gGGCCGGCUggGAggugUGCACCCCCcgAGCg -3'
miRNA:   3'- -CCGGUCGGuuUUga--ACGUGGGGG--UCG- -5'
33269 3' -55 NC_007605.1 + 28346 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 28640 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 94980 0.75 0.493661
Target:  5'- gGGCCAGCCcgggGGGACcuccccUGCuguuCCCCCAGUu -3'
miRNA:   3'- -CCGGUCGG----UUUUGa-----ACGu---GGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 161272 0.75 0.484062
Target:  5'- -cCCGGCCu--GCUUGCGCagCCCAGCc -3'
miRNA:   3'- ccGGUCGGuuuUGAACGUGg-GGGUCG- -5'
33269 3' -55 NC_007605.1 + 120297 0.75 0.474554
Target:  5'- gGGCCaAGCCAAGggGCccugGCACCUCCGGg -3'
miRNA:   3'- -CCGG-UCGGUUU--UGaa--CGUGGGGGUCg -5'
33269 3' -55 NC_007605.1 + 72605 0.76 0.46514
Target:  5'- cGG-CAGCCGGA---UGCACCgCCCGGCg -3'
miRNA:   3'- -CCgGUCGGUUUugaACGUGG-GGGUCG- -5'
33269 3' -55 NC_007605.1 + 73734 0.76 0.455824
Target:  5'- cGGCCgaGGCCAGGGgaagGCGCCCCCuguaGGCg -3'
miRNA:   3'- -CCGG--UCGGUUUUgaa-CGUGGGGG----UCG- -5'
33269 3' -55 NC_007605.1 + 160791 0.77 0.419606
Target:  5'- uGGCCAGaCGGcGCUUGCgucuGCCCCCGGa -3'
miRNA:   3'- -CCGGUCgGUUuUGAACG----UGGGGGUCg -5'
33269 3' -55 NC_007605.1 + 53369 0.77 0.402163
Target:  5'- aGCCAGCCGAGGCcccaaGCgccagGCCCCUGGCa -3'
miRNA:   3'- cCGGUCGGUUUUGaa---CG-----UGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 163254 0.77 0.393616
Target:  5'- aGGCUGGCCGGGGuCUcgUGCgagGCCUCCAGCa -3'
miRNA:   3'- -CCGGUCGGUUUU-GA--ACG---UGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 158829 0.78 0.360628
Target:  5'- gGGCCuGGCCGGGGCUgaccGCGuCCgCCCGGCg -3'
miRNA:   3'- -CCGG-UCGGUUUUGAa---CGU-GG-GGGUCG- -5'
33269 3' -55 NC_007605.1 + 34778 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 34484 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 31709 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 31415 0.78 0.360628
Target:  5'- aGGCCAGCCGgagGGACcccgGCAgCCCgGGCg -3'
miRNA:   3'- -CCGGUCGGU---UUUGaa--CGUgGGGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.