Results 41 - 60 of 349 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33269 | 3' | -55 | NC_007605.1 | + | 154145 | 0.66 | 0.931525 |
Target: 5'- aGGCC-GCCAGcAGCUucuugauggccuUGCGCUUggCCAGCc -3' miRNA: 3'- -CCGGuCGGUU-UUGA------------ACGUGGG--GGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 155796 | 0.66 | 0.931525 |
Target: 5'- aGGCCAGCaccuucGACcgcaGgACCCCCuGCc -3' miRNA: 3'- -CCGGUCGguu---UUGaa--CgUGGGGGuCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 76255 | 0.66 | 0.926266 |
Target: 5'- cGCCuuCCAGAAUgacaagcUGUugCUCCAGCa -3' miRNA: 3'- cCGGucGGUUUUGa------ACGugGGGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 30278 | 0.66 | 0.936541 |
Target: 5'- -aUCAGCCAGGGCUucaUGCcCUCCuCAGUu -3' miRNA: 3'- ccGGUCGGUUUUGA---ACGuGGGG-GUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 129409 | 0.66 | 0.931525 |
Target: 5'- aGGCCgagagaAGCaCAGAugUgGCGCCUCCAa- -3' miRNA: 3'- -CCGG------UCG-GUUUugAaCGUGGGGGUcg -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 40411 | 0.66 | 0.926266 |
Target: 5'- aGGCCuguGCCAugg---GgACCCCCuGCc -3' miRNA: 3'- -CCGGu--CGGUuuugaaCgUGGGGGuCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 108994 | 0.66 | 0.931525 |
Target: 5'- uGGCaAGCCcgggaGAGACUgcuCACCCCgGGUg -3' miRNA: 3'- -CCGgUCGG-----UUUUGAac-GUGGGGgUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 88583 | 0.66 | 0.936541 |
Target: 5'- gGGCCGGC---GGCUccugGUAUCCCUGGUa -3' miRNA: 3'- -CCGGUCGguuUUGAa---CGUGGGGGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 38264 | 0.66 | 0.945855 |
Target: 5'- gGGgCAGCCGGggUUccugGCGCUCCgGGg -3' miRNA: 3'- -CCgGUCGGUUuuGAa---CGUGGGGgUCg -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 112628 | 0.66 | 0.926266 |
Target: 5'- aGGCCuGCCAGGAC----ACgCCCgAGCa -3' miRNA: 3'- -CCGGuCGGUUUUGaacgUG-GGGgUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 24140 | 0.66 | 0.936541 |
Target: 5'- -aUCAGCCAGGGCUucaUGCcCUCCuCAGUu -3' miRNA: 3'- ccGGUCGGUUUUGA---ACGuGGGG-GUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 61969 | 0.66 | 0.936541 |
Target: 5'- gGGCaCAGCCGcGACgggggGCGuuuguCCCCC-GCu -3' miRNA: 3'- -CCG-GUCGGUuUUGaa---CGU-----GGGGGuCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 56482 | 0.66 | 0.936541 |
Target: 5'- aGGUCGGUCAGGcgucuGCggGcCGCCUCCAGg -3' miRNA: 3'- -CCGGUCGGUUU-----UGaaC-GUGGGGGUCg -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 27209 | 0.66 | 0.936541 |
Target: 5'- -aUCAGCCAGGGCUucaUGCcCUCCuCAGUu -3' miRNA: 3'- ccGGUCGGUUUUGA---ACGuGGGG-GUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 39763 | 0.66 | 0.931525 |
Target: 5'- gGGgCAGCCGGggUUccugGCGCUCCaCuGCa -3' miRNA: 3'- -CCgGUCGGUUuuGAa---CGUGGGG-GuCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 14934 | 0.66 | 0.936541 |
Target: 5'- -aUCAGCCAGGGCUucaUGCcCUCCuCAGUu -3' miRNA: 3'- ccGGUCGGUUUUGA---ACGuGGGG-GUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 18002 | 0.66 | 0.936541 |
Target: 5'- -aUCAGCCAGGGCUucaUGCcCUCCuCAGUu -3' miRNA: 3'- ccGGUCGGUUUUGA---ACGuGGGG-GUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 80282 | 0.66 | 0.926266 |
Target: 5'- gGGUCGuGCUGGAGCUg--ACCCaCCGGCa -3' miRNA: 3'- -CCGGU-CGGUUUUGAacgUGGG-GGUCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 36939 | 0.66 | 0.926266 |
Target: 5'- uGCCAGaCCAAucaaUGCACCCUCuuacucaucaaAGCa -3' miRNA: 3'- cCGGUC-GGUUuugaACGUGGGGG-----------UCG- -5' |
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33269 | 3' | -55 | NC_007605.1 | + | 56537 | 0.66 | 0.926266 |
Target: 5'- cGGCCAGCUggGGAAUUUcagccaGCAUCUuagcaCCGGCa -3' miRNA: 3'- -CCGGUCGG--UUUUGAA------CGUGGG-----GGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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