miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33269 5' -51.5 NC_007605.1 + 28542 0.66 0.9947
Target:  5'- gCUGCCGGGGucccucCGg--CUGGCCUGg-- -3'
miRNA:   3'- -GGUGGCUCUu-----GCauaGACCGGACaac -5'
33269 5' -51.5 NC_007605.1 + 31611 0.66 0.9947
Target:  5'- gCUGCCGGGGucccucCGg--CUGGCCUGg-- -3'
miRNA:   3'- -GGUGGCUCUu-----GCauaGACCGGACaac -5'
33269 5' -51.5 NC_007605.1 + 160001 0.66 0.9947
Target:  5'- gC-CCGGGAGCGUcgCcUGGcCCUGg-- -3'
miRNA:   3'- gGuGGCUCUUGCAuaG-ACC-GGACaac -5'
33269 5' -51.5 NC_007605.1 + 13197 0.66 0.9947
Target:  5'- gCUGCCGGGGucccucCGg--CUGGCCUGg-- -3'
miRNA:   3'- -GGUGGCUCUu-----GCauaGACCGGACaac -5'
33269 5' -51.5 NC_007605.1 + 34680 0.66 0.9947
Target:  5'- gCUGCCGGGGucccucCGg--CUGGCCUGg-- -3'
miRNA:   3'- -GGUGGCUCUu-----GCauaGACCGGACaac -5'
33269 5' -51.5 NC_007605.1 + 25473 0.66 0.9947
Target:  5'- gCUGCCGGGGucccucCGg--CUGGCCUGg-- -3'
miRNA:   3'- -GGUGGCUCUu-----GCauaGACCGGACaac -5'
33269 5' -51.5 NC_007605.1 + 22404 0.66 0.9947
Target:  5'- gCUGCCGGGGucccucCGg--CUGGCCUGg-- -3'
miRNA:   3'- -GGUGGCUCUu-----GCauaGACCGGACaac -5'
33269 5' -51.5 NC_007605.1 + 19335 0.66 0.9947
Target:  5'- gCUGCCGGGGucccucCGg--CUGGCCUGg-- -3'
miRNA:   3'- -GGUGGCUCUu-----GCauaGACCGGACaac -5'
33269 5' -51.5 NC_007605.1 + 16266 0.66 0.9947
Target:  5'- gCUGCCGGGGucccucCGg--CUGGCCUGg-- -3'
miRNA:   3'- -GGUGGCUCUu-----GCauaGACCGGACaac -5'
33269 5' -51.5 NC_007605.1 + 34394 0.66 0.993866
Target:  5'- -gGCCGAGAccCGgGUCUggggGGCCUGUg- -3'
miRNA:   3'- ggUGGCUCUu-GCaUAGA----CCGGACAac -5'
33269 5' -51.5 NC_007605.1 + 22119 0.66 0.993866
Target:  5'- -gGCCGAGAccCGgGUCUggggGGCCUGUg- -3'
miRNA:   3'- ggUGGCUCUu-GCaUAGA----CCGGACAac -5'
33269 5' -51.5 NC_007605.1 + 158370 0.66 0.993866
Target:  5'- cCCACCGGGGGC----CUGGCCa---- -3'
miRNA:   3'- -GGUGGCUCUUGcauaGACCGGacaac -5'
33269 5' -51.5 NC_007605.1 + 12912 0.66 0.993866
Target:  5'- -gGCCGAGAccCGgGUCUggggGGCCUGUg- -3'
miRNA:   3'- ggUGGCUCUu-GCaUAGA----CCGGACAac -5'
33269 5' -51.5 NC_007605.1 + 19050 0.66 0.993866
Target:  5'- -gGCCGAGAccCGgGUCUggggGGCCUGUg- -3'
miRNA:   3'- ggUGGCUCUu-GCaUAGA----CCGGACAac -5'
33269 5' -51.5 NC_007605.1 + 25187 0.66 0.993866
Target:  5'- -gGCCGAGAccCGgGUCUggggGGCCUGUg- -3'
miRNA:   3'- ggUGGCUCUu-GCaUAGA----CCGGACAac -5'
33269 5' -51.5 NC_007605.1 + 28256 0.66 0.993866
Target:  5'- -gGCCGAGAccCGgGUCUggggGGCCUGUg- -3'
miRNA:   3'- ggUGGCUCUu-GCaUAGA----CCGGACAac -5'
33269 5' -51.5 NC_007605.1 + 31325 0.66 0.993866
Target:  5'- -gGCCGAGAccCGgGUCUggggGGCCUGUg- -3'
miRNA:   3'- ggUGGCUCUu-GCaUAGA----CCGGACAac -5'
33269 5' -51.5 NC_007605.1 + 15981 0.66 0.993866
Target:  5'- -gGCCGAGAccCGgGUCUggggGGCCUGUg- -3'
miRNA:   3'- ggUGGCUCUu-GCaUAGA----CCGGACAac -5'
33269 5' -51.5 NC_007605.1 + 53782 0.66 0.99293
Target:  5'- -aGCUGAGGuUGgcUCUGGCCacGUUGg -3'
miRNA:   3'- ggUGGCUCUuGCauAGACCGGa-CAAC- -5'
33269 5' -51.5 NC_007605.1 + 100083 0.66 0.991884
Target:  5'- aCCACCGAGAACuacacgcuUCUGGgCUa--- -3'
miRNA:   3'- -GGUGGCUCUUGcau-----AGACCgGAcaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.