miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33270 3' -60.1 NC_007605.1 + 151022 0.67 0.71533
Target:  5'- aGgCCCGGGGGCUggcgAgGCGGCGUccGCGGg -3'
miRNA:   3'- -CgGGGCCUCCGG----UgCGUCGUAc-UGUC- -5'
33270 3' -60.1 NC_007605.1 + 115746 0.67 0.71533
Target:  5'- uGCCCCGauggcuAGGCCGuccgGCAGCAUGccccgaGCAGc -3'
miRNA:   3'- -CGGGGCc-----UCCGGUg---CGUCGUAC------UGUC- -5'
33270 3' -60.1 NC_007605.1 + 2045 0.67 0.71533
Target:  5'- uGCCCUGGAGGCCucAgGCAacaacuauguGUAUGccuACGGa -3'
miRNA:   3'- -CGGGGCCUCCGG--UgCGU----------CGUAC---UGUC- -5'
33270 3' -60.1 NC_007605.1 + 162672 0.67 0.705664
Target:  5'- gGCCCCGagaucacauaGGGGUCccuccgcuGCGUGGaCAUGACGGg -3'
miRNA:   3'- -CGGGGC----------CUCCGG--------UGCGUC-GUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 71339 0.67 0.704694
Target:  5'- aCCCUGGGGGCCcuuggggcucuggGCGCucuuGCucccgggGGCAGg -3'
miRNA:   3'- cGGGGCCUCCGG-------------UGCGu---CGua-----CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 157061 0.67 0.702752
Target:  5'- gGUCUCGGAGccagggacccucauGCUcuuGCGCAGgGUGACGGu -3'
miRNA:   3'- -CGGGGCCUC--------------CGG---UGCGUCgUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 4641 0.67 0.695939
Target:  5'- --gUCGGAGGCCAC-CGGCAuagUGAUGGu -3'
miRNA:   3'- cggGGCCUCCGGUGcGUCGU---ACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 154451 0.67 0.695939
Target:  5'- cGUCCCGGucagAGGCCGag-GGCAUGgGCAGg -3'
miRNA:   3'- -CGGGGCC----UCCGGUgcgUCGUAC-UGUC- -5'
33270 3' -60.1 NC_007605.1 + 38909 0.67 0.686165
Target:  5'- cGCUCCGGGGGCagCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUCCG--GUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 160995 0.67 0.676348
Target:  5'- gGCUCCGGGGGCagACGCaAGCGccgucUGGCc- -3'
miRNA:   3'- -CGGGGCCUCCGg-UGCG-UCGU-----ACUGuc -5'
33270 3' -60.1 NC_007605.1 + 171043 0.67 0.676348
Target:  5'- cCCCCGGGGGgCAUcgggggguGgGGCAUGGgGGg -3'
miRNA:   3'- cGGGGCCUCCgGUG--------CgUCGUACUgUC- -5'
33270 3' -60.1 NC_007605.1 + 169983 0.67 0.676348
Target:  5'- cCCCCGGGGGgCAUcgggggguGgGGCAUGGgGGg -3'
miRNA:   3'- cGGGGCCUCCgGUG--------CgUCGUACUgUC- -5'
33270 3' -60.1 NC_007605.1 + 105353 0.67 0.676348
Target:  5'- uCCCaCGGGGGCgcccCugGCAGagagGUGGCAGc -3'
miRNA:   3'- cGGG-GCCUCCG----GugCGUCg---UACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 4496 0.68 0.666498
Target:  5'- aCCCCGGccugguguuugAGGUggaggaGCGCAGCGUGGguGa -3'
miRNA:   3'- cGGGGCC-----------UCCGg-----UGCGUCGUACUguC- -5'
33270 3' -60.1 NC_007605.1 + 2682 0.68 0.666498
Target:  5'- gGCCCCGGAGcagauGCCAgGgCGGCGgcccGGCGc -3'
miRNA:   3'- -CGGGGCCUC-----CGGUgC-GUCGUa---CUGUc -5'
33270 3' -60.1 NC_007605.1 + 58120 0.68 0.656621
Target:  5'- gGCCgCGGAGGCCGgggcCGCAGag-GcCGGg -3'
miRNA:   3'- -CGGgGCCUCCGGU----GCGUCguaCuGUC- -5'
33270 3' -60.1 NC_007605.1 + 152465 0.68 0.656621
Target:  5'- -aCCCGGGGGCCAUGguGgAgaGCAu -3'
miRNA:   3'- cgGGGCCUCCGGUGCguCgUacUGUc -5'
33270 3' -60.1 NC_007605.1 + 67232 0.68 0.656621
Target:  5'- gGCCCCGGA--CC-CGCAGCAgGGCu- -3'
miRNA:   3'- -CGGGGCCUccGGuGCGUCGUaCUGuc -5'
33270 3' -60.1 NC_007605.1 + 99339 0.68 0.656621
Target:  5'- gGCCUCGGAGGugcCCG-GguGCGUGGuCGGg -3'
miRNA:   3'- -CGGGGCCUCC---GGUgCguCGUACU-GUC- -5'
33270 3' -60.1 NC_007605.1 + 161385 0.68 0.646726
Target:  5'- cCCCCGuguacuuguuGAuGGUCACugGCAGCGUGACAa -3'
miRNA:   3'- cGGGGC----------CU-CCGGUG--CGUCGUACUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.