miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33270 3' -60.1 NC_007605.1 + 63256 0.66 0.732556
Target:  5'- cCCCCGG-GGCCA-GCAGCccugcgcgccaGACGGc -3'
miRNA:   3'- cGGGGCCuCCGGUgCGUCGua---------CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 73317 0.67 0.72493
Target:  5'- gGCCCCGGcagguGGCCugGCcggccaAGCAUaGAa-- -3'
miRNA:   3'- -CGGGGCCu----CCGGugCG------UCGUA-CUguc -5'
33270 3' -60.1 NC_007605.1 + 39283 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 39033 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 39158 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 39408 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 38784 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 38659 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 38284 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 38409 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 39533 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 39658 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 58060 0.67 0.72493
Target:  5'- gGCCgCGGAGGCCGgggcCGCGGag-GcCGGg -3'
miRNA:   3'- -CGGgGCCUCCGGU----GCGUCguaCuGUC- -5'
33270 3' -60.1 NC_007605.1 + 51161 0.67 0.72493
Target:  5'- uGCCaucaaUCGGGGGCCugGgAGaGUGAUGGg -3'
miRNA:   3'- -CGG-----GGCCUCCGGugCgUCgUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 38534 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 45139 0.67 0.72493
Target:  5'- uGCCCCaGGcuaaGGGCCugGCuGCA-GAUg- -3'
miRNA:   3'- -CGGGG-CC----UCCGGugCGuCGUaCUGuc -5'
33270 3' -60.1 NC_007605.1 + 53774 0.67 0.72493
Target:  5'- uGCCCCGGAuccaCUugGCGGC-UGcCAGg -3'
miRNA:   3'- -CGGGGCCUcc--GGugCGUCGuACuGUC- -5'
33270 3' -60.1 NC_007605.1 + 38448 0.67 0.723973
Target:  5'- aCCCCGGcugccccAGGaCCugGCGGUAguGCAGu -3'
miRNA:   3'- cGGGGCC-------UCC-GGugCGUCGUacUGUC- -5'
33270 3' -60.1 NC_007605.1 + 148932 0.67 0.722058
Target:  5'- gGCUCaccagGGAGGCCugGgAgggggcgagcagucGCAUGGCGGg -3'
miRNA:   3'- -CGGGg----CCUCCGGugCgU--------------CGUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 63778 0.67 0.719179
Target:  5'- cGCCgCCGGAGaGCCACGCguccagauccacaaaGGCcuccuggGGCAc -3'
miRNA:   3'- -CGG-GGCCUC-CGGUGCG---------------UCGua-----CUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.