miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33270 3' -60.1 NC_007605.1 + 62623 0.7 0.510133
Target:  5'- gGCCCUGGcGGCCGCGUAccggcGCAUcaucgaagagGGCAGc -3'
miRNA:   3'- -CGGGGCCuCCGGUGCGU-----CGUA----------CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 63560 0.7 0.513905
Target:  5'- uGCCCCaGGAGGCCuuuguggaucuggacGCGUGGCucuccGGCGGc -3'
miRNA:   3'- -CGGGG-CCUCCGG---------------UGCGUCGua---CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 109209 0.7 0.519585
Target:  5'- gGCCCCGGucauGaCCugGUGGCA-GACAGc -3'
miRNA:   3'- -CGGGGCCu---CcGGugCGUCGUaCUGUC- -5'
33270 3' -60.1 NC_007605.1 + 125885 0.7 0.526242
Target:  5'- cUCCCGGAguguggcauuguuuGGCCAUGaCAGCAUGAa-- -3'
miRNA:   3'- cGGGGCCU--------------CCGGUGC-GUCGUACUguc -5'
33270 3' -60.1 NC_007605.1 + 94251 0.7 0.529105
Target:  5'- cCCCCGGGGGUCugGUuuauAGCAUcGCGa -3'
miRNA:   3'- cGGGGCCUCCGGugCG----UCGUAcUGUc -5'
33270 3' -60.1 NC_007605.1 + 163265 0.7 0.548331
Target:  5'- gGUCUCGugcGAGGCCuC-CAGCAUGGCGGg -3'
miRNA:   3'- -CGGGGC---CUCCGGuGcGUCGUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 162300 0.69 0.558027
Target:  5'- gGCCaaGGAGGCCAaggUGguGCAUGGgGa -3'
miRNA:   3'- -CGGggCCUCCGGU---GCguCGUACUgUc -5'
33270 3' -60.1 NC_007605.1 + 80810 0.69 0.563868
Target:  5'- uCCCCGGGGGUacauCGCGGCAgcuuaaaggugccGGCGGa -3'
miRNA:   3'- cGGGGCCUCCGgu--GCGUCGUa------------CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 160115 0.69 0.567771
Target:  5'- cCCCCGGAGGUgGCGgAGCucu-CGGa -3'
miRNA:   3'- cGGGGCCUCCGgUGCgUCGuacuGUC- -5'
33270 3' -60.1 NC_007605.1 + 170652 0.69 0.577557
Target:  5'- gGCUCCGG-GGCUgcggGCGguGgAUGGCGGc -3'
miRNA:   3'- -CGGGGCCuCCGG----UGCguCgUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 62726 0.69 0.577557
Target:  5'- aGCUCCaGAGGCaucaGCGCGcGCAggcgGGCAGc -3'
miRNA:   3'- -CGGGGcCUCCGg---UGCGU-CGUa---CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 103579 0.69 0.577557
Target:  5'- aGCCCgGGGGGaCACGgAGCcUGACc- -3'
miRNA:   3'- -CGGGgCCUCCgGUGCgUCGuACUGuc -5'
33270 3' -60.1 NC_007605.1 + 125581 0.69 0.577557
Target:  5'- gGCaCCgGGAGGUgG-GCAGCGUGGuCAGg -3'
miRNA:   3'- -CG-GGgCCUCCGgUgCGUCGUACU-GUC- -5'
33270 3' -60.1 NC_007605.1 + 45098 0.69 0.58738
Target:  5'- gGCCCC-GAGGCUcuCGCAGagugGGCAGa -3'
miRNA:   3'- -CGGGGcCUCCGGu-GCGUCgua-CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 65365 0.69 0.58738
Target:  5'- cGCCCUGcAGGUCGCGCcaaaagugGGCGUuGCAGg -3'
miRNA:   3'- -CGGGGCcUCCGGUGCG--------UCGUAcUGUC- -5'
33270 3' -60.1 NC_007605.1 + 39439 0.69 0.597233
Target:  5'- uGCCCCaGGAccuggcGGCgGCGCAGCgGUGcccaGCGGg -3'
miRNA:   3'- -CGGGG-CCU------CCGgUGCGUCG-UAC----UGUC- -5'
33270 3' -60.1 NC_007605.1 + 39564 0.69 0.597233
Target:  5'- uGCCCCaGGAccuggcGGCgGCGCAGCgGUGcccaGCGGg -3'
miRNA:   3'- -CGGGG-CCU------CCGgUGCGUCG-UAC----UGUC- -5'
33270 3' -60.1 NC_007605.1 + 39689 0.69 0.597233
Target:  5'- uGCCCCaGGAccuggcGGCgGCGCAGCgGUGcccaGCGGg -3'
miRNA:   3'- -CGGGG-CCU------CCGgUGCGUCG-UAC----UGUC- -5'
33270 3' -60.1 NC_007605.1 + 39939 0.69 0.597233
Target:  5'- uGCCCCaGGAccuggcGGCgGCGCAGCgGUGcccaGCGGg -3'
miRNA:   3'- -CGGGG-CCU------CCGgUGCGUCG-UAC----UGUC- -5'
33270 3' -60.1 NC_007605.1 + 39814 0.69 0.597233
Target:  5'- uGCCCCaGGAccuggcGGCgGCGCAGCgGUGcccaGCGGg -3'
miRNA:   3'- -CGGGG-CCU------CCGgUGCGUCG-UAC----UGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.