miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33270 3' -60.1 NC_007605.1 + 42350 0.66 0.734455
Target:  5'- uGgCCUGGAuGGCCugGUgcauGCAUGccuGCAGg -3'
miRNA:   3'- -CgGGGCCU-CCGGugCGu---CGUAC---UGUC- -5'
33270 3' -60.1 NC_007605.1 + 169983 0.67 0.676348
Target:  5'- cCCCCGGGGGgCAUcgggggguGgGGCAUGGgGGg -3'
miRNA:   3'- cGGGGCCUCCgGUG--------CgUCGUACUgUC- -5'
33270 3' -60.1 NC_007605.1 + 38534 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 38409 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 38284 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 115746 0.67 0.71533
Target:  5'- uGCCCCGauggcuAGGCCGuccgGCAGCAUGccccgaGCAGc -3'
miRNA:   3'- -CGGGGCc-----UCCGGUg---CGUCGUAC------UGUC- -5'
33270 3' -60.1 NC_007605.1 + 2045 0.67 0.71533
Target:  5'- uGCCCUGGAGGCCucAgGCAacaacuauguGUAUGccuACGGa -3'
miRNA:   3'- -CGGGGCCUCCGG--UgCGU----------CGUAC---UGUC- -5'
33270 3' -60.1 NC_007605.1 + 171043 0.67 0.676348
Target:  5'- cCCCCGGGGGgCAUcgggggguGgGGCAUGGgGGg -3'
miRNA:   3'- cGGGGCCUCCgGUG--------CgUCGUACUgUC- -5'
33270 3' -60.1 NC_007605.1 + 105353 0.67 0.676348
Target:  5'- uCCCaCGGGGGCgcccCugGCAGagagGUGGCAGc -3'
miRNA:   3'- cGGG-GCCUCCG----GugCGUCg---UACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 63778 0.67 0.719179
Target:  5'- cGCCgCCGGAGaGCCACGCguccagauccacaaaGGCcuccuggGGCAc -3'
miRNA:   3'- -CGG-GGCCUC-CGGUGCG---------------UCGua-----CUGUc -5'
33270 3' -60.1 NC_007605.1 + 39033 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 39283 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 51161 0.67 0.72493
Target:  5'- uGCCaucaaUCGGGGGCCugGgAGaGUGAUGGg -3'
miRNA:   3'- -CGG-----GGCCUCCGGugCgUCgUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 39533 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 39658 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 73317 0.67 0.72493
Target:  5'- gGCCCCGGcagguGGCCugGCcggccaAGCAUaGAa-- -3'
miRNA:   3'- -CGGGGCCu----CCGGugCG------UCGUA-CUguc -5'
33270 3' -60.1 NC_007605.1 + 53774 0.67 0.72493
Target:  5'- uGCCCCGGAuccaCUugGCGGC-UGcCAGg -3'
miRNA:   3'- -CGGGGCCUcc--GGugCGUCGuACuGUC- -5'
33270 3' -60.1 NC_007605.1 + 160995 0.67 0.676348
Target:  5'- gGCUCCGGGGGCagACGCaAGCGccgucUGGCc- -3'
miRNA:   3'- -CGGGGCCUCCGg-UGCG-UCGU-----ACUGuc -5'
33270 3' -60.1 NC_007605.1 + 4641 0.67 0.695939
Target:  5'- --gUCGGAGGCCAC-CGGCAuagUGAUGGu -3'
miRNA:   3'- cggGGCCUCCGGUGcGUCGU---ACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 151022 0.67 0.71533
Target:  5'- aGgCCCGGGGGCUggcgAgGCGGCGUccGCGGg -3'
miRNA:   3'- -CgGGGCCUCCGG----UgCGUCGUAc-UGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.