miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33270 3' -60.1 NC_007605.1 + 38909 0.67 0.686165
Target:  5'- cGCUCCGGGGGCagCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUCCG--GUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 38940 0.69 0.597233
Target:  5'- uGCCCCaGGAccuggcGGCgGCGCAGCgGUGcccaGCGGg -3'
miRNA:   3'- -CGGGG-CCU------CCGgUGCGUCG-UAC----UGUC- -5'
33270 3' -60.1 NC_007605.1 + 39033 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 39065 0.69 0.597233
Target:  5'- uGCCCCaGGAccuggcGGCgGCGCAGCgGUGcccaGCGGg -3'
miRNA:   3'- -CGGGG-CCU------CCGgUGCGUCG-UAC----UGUC- -5'
33270 3' -60.1 NC_007605.1 + 39158 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 39189 0.69 0.597233
Target:  5'- uGCCCCaGGAccuggcGGCgGCGCAGCgGUGcccaGCGGg -3'
miRNA:   3'- -CGGGG-CCU------CCGgUGCGUCG-UAC----UGUC- -5'
33270 3' -60.1 NC_007605.1 + 39283 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 39314 0.69 0.597233
Target:  5'- uGCCCCaGGAccuggcGGCgGCGCAGCgGUGcccaGCGGg -3'
miRNA:   3'- -CGGGG-CCU------CCGgUGCGUCG-UAC----UGUC- -5'
33270 3' -60.1 NC_007605.1 + 39408 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 39439 0.69 0.597233
Target:  5'- uGCCCCaGGAccuggcGGCgGCGCAGCgGUGcccaGCGGg -3'
miRNA:   3'- -CGGGG-CCU------CCGgUGCGUCG-UAC----UGUC- -5'
33270 3' -60.1 NC_007605.1 + 39533 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 39564 0.69 0.597233
Target:  5'- uGCCCCaGGAccuggcGGCgGCGCAGCgGUGcccaGCGGg -3'
miRNA:   3'- -CGGGG-CCU------CCGgUGCGUCG-UAC----UGUC- -5'
33270 3' -60.1 NC_007605.1 + 39658 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 39689 0.69 0.597233
Target:  5'- uGCCCCaGGAccuggcGGCgGCGCAGCgGUGcccaGCGGg -3'
miRNA:   3'- -CGGGG-CCU------CCGgUGCGUCG-UAC----UGUC- -5'
33270 3' -60.1 NC_007605.1 + 39814 0.69 0.597233
Target:  5'- uGCCCCaGGAccuggcGGCgGCGCAGCgGUGcccaGCGGg -3'
miRNA:   3'- -CGGGG-CCU------CCGgUGCGUCG-UAC----UGUC- -5'
33270 3' -60.1 NC_007605.1 + 39939 0.69 0.597233
Target:  5'- uGCCCCaGGAccuggcGGCgGCGCAGCgGUGcccaGCGGg -3'
miRNA:   3'- -CGGGG-CCU------CCGgUGCGUCG-UAC----UGUC- -5'
33270 3' -60.1 NC_007605.1 + 42350 0.66 0.734455
Target:  5'- uGgCCUGGAuGGCCugGUgcauGCAUGccuGCAGg -3'
miRNA:   3'- -CgGGGCCU-CCGGugCGu---CGUAC---UGUC- -5'
33270 3' -60.1 NC_007605.1 + 45098 0.69 0.58738
Target:  5'- gGCCCC-GAGGCUcuCGCAGagugGGCAGa -3'
miRNA:   3'- -CGGGGcCUCCGGu-GCGUCgua-CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 45139 0.67 0.72493
Target:  5'- uGCCCCaGGcuaaGGGCCugGCuGCA-GAUg- -3'
miRNA:   3'- -CGGGG-CC----UCCGGugCGuCGUaCUGuc -5'
33270 3' -60.1 NC_007605.1 + 48738 0.66 0.743897
Target:  5'- aGgCCCGGGGaCC-CGCGGCA-GGCAc -3'
miRNA:   3'- -CgGGGCCUCcGGuGCGUCGUaCUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.