miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33270 3' -60.1 NC_007605.1 + 2045 0.67 0.71533
Target:  5'- uGCCCUGGAGGCCucAgGCAacaacuauguGUAUGccuACGGa -3'
miRNA:   3'- -CGGGGCCUCCGG--UgCGU----------CGUAC---UGUC- -5'
33270 3' -60.1 NC_007605.1 + 2069 0.74 0.333237
Target:  5'- gGCCCCGGgucuAGGCCgaGCGCggAGCGUGGguCAGa -3'
miRNA:   3'- -CGGGGCC----UCCGG--UGCG--UCGUACU--GUC- -5'
33270 3' -60.1 NC_007605.1 + 2682 0.68 0.666498
Target:  5'- gGCCCCGGAGcagauGCCAgGgCGGCGgcccGGCGc -3'
miRNA:   3'- -CGGGGCCUC-----CGGUgC-GUCGUa---CUGUc -5'
33270 3' -60.1 NC_007605.1 + 2754 0.66 0.780663
Target:  5'- uGgCCUGGAuGGuCCcCGCGGCAUGAa-- -3'
miRNA:   3'- -CgGGGCCU-CC-GGuGCGUCGUACUguc -5'
33270 3' -60.1 NC_007605.1 + 3245 0.74 0.311923
Target:  5'- gGCCCgGGGGGCgCGCGUAGCccgagAUGcACGGg -3'
miRNA:   3'- -CGGGgCCUCCG-GUGCGUCG-----UAC-UGUC- -5'
33270 3' -60.1 NC_007605.1 + 4496 0.68 0.666498
Target:  5'- aCCCCGGccugguguuugAGGUggaggaGCGCAGCGUGGguGa -3'
miRNA:   3'- cGGGGCC-----------UCCGg-----UGCGUCGUACUguC- -5'
33270 3' -60.1 NC_007605.1 + 4641 0.67 0.695939
Target:  5'- --gUCGGAGGCCAC-CGGCAuagUGAUGGu -3'
miRNA:   3'- cggGGCCUCCGGUGcGUCGU---ACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 4863 0.68 0.62592
Target:  5'- cGCCCCGGgcaccagGGGCCAUGaaAGCcuccUGGCGGc -3'
miRNA:   3'- -CGGGGCC-------UCCGGUGCg-UCGu---ACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 5018 0.68 0.63682
Target:  5'- uGCCCUGGcAGGCCGUGCcacCGUGGCGc -3'
miRNA:   3'- -CGGGGCC-UCCGGUGCGuc-GUACUGUc -5'
33270 3' -60.1 NC_007605.1 + 5496 1.1 0.001081
Target:  5'- aGCCCCGGAGGCCACGCAGCAUGACAGa -3'
miRNA:   3'- -CGGGGCCUCCGGUGCGUCGUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 10570 0.66 0.743897
Target:  5'- gGCCCgGGcccAGGCCuuGCagGGCA-GACGGu -3'
miRNA:   3'- -CGGGgCC---UCCGGugCG--UCGUaCUGUC- -5'
33270 3' -60.1 NC_007605.1 + 38284 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 38409 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 38448 0.67 0.723973
Target:  5'- aCCCCGGcugccccAGGaCCugGCGGUAguGCAGu -3'
miRNA:   3'- cGGGGCC-------UCC-GGugCGUCGUacUGUC- -5'
33270 3' -60.1 NC_007605.1 + 38534 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 38565 0.69 0.597233
Target:  5'- uGCCCCaGGAccuggcGGCgGCGCAGCgGUGcccaGCGGg -3'
miRNA:   3'- -CGGGG-CCU------CCGgUGCGUCG-UAC----UGUC- -5'
33270 3' -60.1 NC_007605.1 + 38659 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 38690 0.69 0.597233
Target:  5'- uGCCCCaGGAccuggcGGCgGCGCAGCgGUGcccaGCGGg -3'
miRNA:   3'- -CGGGG-CCU------CCGgUGCGUCG-UAC----UGUC- -5'
33270 3' -60.1 NC_007605.1 + 38784 0.67 0.72493
Target:  5'- cGCUCCGGGGgcaGCCGgGCGGCcgccgGugGGu -3'
miRNA:   3'- -CGGGGCCUC---CGGUgCGUCGua---CugUC- -5'
33270 3' -60.1 NC_007605.1 + 38815 0.69 0.597233
Target:  5'- uGCCCCaGGAccuggcGGCgGCGCAGCgGUGcccaGCGGg -3'
miRNA:   3'- -CGGGG-CCU------CCGgUGCGUCG-UAC----UGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.