miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33270 3' -60.1 NC_007605.1 + 115700 0.68 0.626911
Target:  5'- aGCUCUGGaAGGCCcucauCGCAGUAcacUGGCAc -3'
miRNA:   3'- -CGGGGCC-UCCGGu----GCGUCGU---ACUGUc -5'
33270 3' -60.1 NC_007605.1 + 62726 0.69 0.577557
Target:  5'- aGCUCCaGAGGCaucaGCGCGcGCAggcgGGCAGc -3'
miRNA:   3'- -CGGGGcCUCCGg---UGCGU-CGUa---CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 170652 0.69 0.577557
Target:  5'- gGCUCCGG-GGCUgcggGCGguGgAUGGCGGc -3'
miRNA:   3'- -CGGGGCCuCCGG----UGCguCgUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 45098 0.69 0.58738
Target:  5'- gGCCCC-GAGGCUcuCGCAGagugGGCAGa -3'
miRNA:   3'- -CGGGGcCUCCGGu-GCGUCgua-CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 66012 0.69 0.607111
Target:  5'- cUCCCGGAGGCUcUGCGGCAgcGCu- -3'
miRNA:   3'- cGGGGCCUCCGGuGCGUCGUacUGuc -5'
33270 3' -60.1 NC_007605.1 + 105081 0.69 0.6081
Target:  5'- aCCCCGGGGGCCGCGCucucccaccCAGc -3'
miRNA:   3'- cGGGGCCUCCGGUGCGucguacu--GUC- -5'
33270 3' -60.1 NC_007605.1 + 4863 0.68 0.62592
Target:  5'- cGCCCCGGgcaccagGGGCCAUGaaAGCcuccUGGCGGc -3'
miRNA:   3'- -CGGGGCC-------UCCGGUGCg-UCGu---ACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 63075 0.68 0.626911
Target:  5'- gGCCCCGGGGGaggugGCGGUcgccggggGUGGCAGu -3'
miRNA:   3'- -CGGGGCCUCCggug-CGUCG--------UACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 101168 0.68 0.626911
Target:  5'- gGCCCCGGcgguagaguGGGgUACGCAGCcaGGCGu -3'
miRNA:   3'- -CGGGGCC---------UCCgGUGCGUCGuaCUGUc -5'
33270 3' -60.1 NC_007605.1 + 103579 0.69 0.577557
Target:  5'- aGCCCgGGGGGaCACGgAGCcUGACc- -3'
miRNA:   3'- -CGGGgCCUCCgGUGCgUCGuACUGuc -5'
33270 3' -60.1 NC_007605.1 + 163265 0.7 0.548331
Target:  5'- gGUCUCGugcGAGGCCuC-CAGCAUGGCGGg -3'
miRNA:   3'- -CGGGGC---CUCCGGuGcGUCGUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 63560 0.7 0.513905
Target:  5'- uGCCCCaGGAGGCCuuuguggaucuggacGCGUGGCucuccGGCGGc -3'
miRNA:   3'- -CGGGG-CCUCCGG---------------UGCGUCGua---CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 169592 0.76 0.248416
Target:  5'- gGCUCCGGGGGCUgcggGCGguGgAUGGCGGc -3'
miRNA:   3'- -CGGGGCCUCCGG----UGCguCgUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 170129 0.76 0.248416
Target:  5'- gGCUCCGGGGGCUgcggGCGguGgAUGGCGGc -3'
miRNA:   3'- -CGGGGCCUCCGG----UGCguCgUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 171189 0.76 0.248416
Target:  5'- gGCUCCGGGGGCUgcggGCGguGgAUGGCGGc -3'
miRNA:   3'- -CGGGGCCUCCGG----UGCguCgUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 150700 0.75 0.266266
Target:  5'- -aCCCGGAGGCUGCGUcuCGUGACAu -3'
miRNA:   3'- cgGGGCCUCCGGUGCGucGUACUGUc -5'
33270 3' -60.1 NC_007605.1 + 153912 0.72 0.400094
Target:  5'- cGCCCaggcguccggggaGGGGGCCAgggccUGCAGguUGGCGGg -3'
miRNA:   3'- -CGGGg------------CCUCCGGU-----GCGUCguACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 52240 0.71 0.445338
Target:  5'- gGCCUCGGGGGCgaagCACcggcgugcgaggaGCAGCAUG-CAGg -3'
miRNA:   3'- -CGGGGCCUCCG----GUG-------------CGUCGUACuGUC- -5'
33270 3' -60.1 NC_007605.1 + 129662 0.71 0.482228
Target:  5'- gGCCaaccagCGGAGGuCCACGCAGCcauUGcCAGu -3'
miRNA:   3'- -CGGg-----GCCUCC-GGUGCGUCGu--ACuGUC- -5'
33270 3' -60.1 NC_007605.1 + 162056 0.71 0.49145
Target:  5'- gGCCCUGcaGGGCCGCGUccaGGUcUGGCAGg -3'
miRNA:   3'- -CGGGGCc-UCCGGUGCG---UCGuACUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.