miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33270 3' -60.1 NC_007605.1 + 5496 1.1 0.001081
Target:  5'- aGCCCCGGAGGCCACGCAGCAUGACAGa -3'
miRNA:   3'- -CGGGGCCUCCGGUGCGUCGUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 160115 0.69 0.567771
Target:  5'- cCCCCGGAGGUgGCGgAGCucu-CGGa -3'
miRNA:   3'- cGGGGCCUCCGgUGCgUCGuacuGUC- -5'
33270 3' -60.1 NC_007605.1 + 65365 0.69 0.58738
Target:  5'- cGCCCUGcAGGUCGCGCcaaaagugGGCGUuGCAGg -3'
miRNA:   3'- -CGGGGCcUCCGGUGCG--------UCGUAcUGUC- -5'
33270 3' -60.1 NC_007605.1 + 50827 0.66 0.780663
Target:  5'- cGCCCgUGGuGGCCGC-CGGCGcaGCAGc -3'
miRNA:   3'- -CGGG-GCCuCCGGUGcGUCGUacUGUC- -5'
33270 3' -60.1 NC_007605.1 + 2069 0.74 0.333237
Target:  5'- gGCCCCGGgucuAGGCCgaGCGCggAGCGUGGguCAGa -3'
miRNA:   3'- -CGGGGCC----UCCGG--UGCG--UCGUACU--GUC- -5'
33270 3' -60.1 NC_007605.1 + 74317 0.73 0.363284
Target:  5'- aGCCacagggggaugCCaGAGGCCGCGUGGCGUGGCu- -3'
miRNA:   3'- -CGG-----------GGcCUCCGGUGCGUCGUACUGuc -5'
33270 3' -60.1 NC_007605.1 + 150332 0.72 0.42022
Target:  5'- aCCCCGGAGGagcCCAUGCAGCAcuaGCGu -3'
miRNA:   3'- cGGGGCCUCC---GGUGCGUCGUac-UGUc -5'
33270 3' -60.1 NC_007605.1 + 52423 0.72 0.437452
Target:  5'- cGCCCCcGAGGCCcuucaGCAGCucUGGCAc -3'
miRNA:   3'- -CGGGGcCUCCGGug---CGUCGu-ACUGUc -5'
33270 3' -60.1 NC_007605.1 + 62623 0.7 0.510133
Target:  5'- gGCCCUGGcGGCCGCGUAccggcGCAUcaucgaagagGGCAGc -3'
miRNA:   3'- -CGGGGCCuCCGGUGCGU-----CGUA----------CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 80810 0.69 0.563868
Target:  5'- uCCCCGGGGGUacauCGCGGCAgcuuaaaggugccGGCGGa -3'
miRNA:   3'- cGGGGCCUCCGgu--GCGUCGUa------------CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 125885 0.7 0.526242
Target:  5'- cUCCCGGAguguggcauuguuuGGCCAUGaCAGCAUGAa-- -3'
miRNA:   3'- cGGGGCCU--------------CCGGUGC-GUCGUACUguc -5'
33270 3' -60.1 NC_007605.1 + 154859 0.71 0.446219
Target:  5'- gGCCCCGaGGGGCgCAgGCGGCucGGCAu -3'
miRNA:   3'- -CGGGGC-CUCCG-GUgCGUCGuaCUGUc -5'
33270 3' -60.1 NC_007605.1 + 88026 0.76 0.260203
Target:  5'- gGCCCCgcggcaGGAGGCCcCGCGGCAggaggcccgcGGCAGg -3'
miRNA:   3'- -CGGGG------CCUCCGGuGCGUCGUa---------CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 94251 0.7 0.529105
Target:  5'- cCCCCGGGGGUCugGUuuauAGCAUcGCGa -3'
miRNA:   3'- cGGGGCCUCCGGugCG----UCGUAcUGUc -5'
33270 3' -60.1 NC_007605.1 + 87982 0.75 0.285139
Target:  5'- gGCCCCgcggcaGGAGGCCcCGCGGCAggaggccccgcGGCAGg -3'
miRNA:   3'- -CGGGG------CCUCCGGuGCGUCGUa----------CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 159915 0.71 0.446219
Target:  5'- gGCuCCCGG-GGCCACGgAGCGgcucuucugcGGCGGg -3'
miRNA:   3'- -CG-GGGCCuCCGGUGCgUCGUa---------CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 162300 0.69 0.558027
Target:  5'- gGCCaaGGAGGCCAaggUGguGCAUGGgGa -3'
miRNA:   3'- -CGGggCCUCCGGU---GCguCGUACUgUc -5'
33270 3' -60.1 NC_007605.1 + 125581 0.69 0.577557
Target:  5'- gGCaCCgGGAGGUgG-GCAGCGUGGuCAGg -3'
miRNA:   3'- -CG-GGgCCUCCGgUgCGUCGUACU-GUC- -5'
33270 3' -60.1 NC_007605.1 + 3245 0.74 0.311923
Target:  5'- gGCCCgGGGGGCgCGCGUAGCccgagAUGcACGGg -3'
miRNA:   3'- -CGGGgCCUCCG-GUGCGUCG-----UAC-UGUC- -5'
33270 3' -60.1 NC_007605.1 + 69713 0.73 0.387022
Target:  5'- cCCCCGGAGGCCAuCGCcccacagagaaAGaggGGCAGg -3'
miRNA:   3'- cGGGGCCUCCGGU-GCG-----------UCguaCUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.