miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33270 3' -60.1 NC_007605.1 + 5496 1.1 0.001081
Target:  5'- aGCCCCGGAGGCCACGCAGCAUGACAGa -3'
miRNA:   3'- -CGGGGCCUCCGGUGCGUCGUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 161293 0.77 0.205635
Target:  5'- aGCCCCGGGGGCC-UGCAGCAg----- -3'
miRNA:   3'- -CGGGGCCUCCGGuGCGUCGUacuguc -5'
33270 3' -60.1 NC_007605.1 + 169592 0.76 0.248416
Target:  5'- gGCUCCGGGGGCUgcggGCGguGgAUGGCGGc -3'
miRNA:   3'- -CGGGGCCUCCGG----UGCguCgUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 170129 0.76 0.248416
Target:  5'- gGCUCCGGGGGCUgcggGCGguGgAUGGCGGc -3'
miRNA:   3'- -CGGGGCCUCCGG----UGCguCgUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 171189 0.76 0.248416
Target:  5'- gGCUCCGGGGGCUgcggGCGguGgAUGGCGGc -3'
miRNA:   3'- -CGGGGCCUCCGG----UGCguCgUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 88026 0.76 0.260203
Target:  5'- gGCCCCgcggcaGGAGGCCcCGCGGCAggaggcccgcGGCAGg -3'
miRNA:   3'- -CGGGG------CCUCCGGuGCGUCGUa---------CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 150700 0.75 0.266266
Target:  5'- -aCCCGGAGGCUGCGUcuCGUGACAu -3'
miRNA:   3'- cgGGGCCUCCGGUGCGucGUACUGUc -5'
33270 3' -60.1 NC_007605.1 + 87982 0.75 0.285139
Target:  5'- gGCCCCgcggcaGGAGGCCcCGCGGCAggaggccccgcGGCAGg -3'
miRNA:   3'- -CGGGG------CCUCCGGuGCGUCGUa----------CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 3245 0.74 0.311923
Target:  5'- gGCCCgGGGGGCgCGCGUAGCccgagAUGcACGGg -3'
miRNA:   3'- -CGGGgCCUCCG-GUGCGUCG-----UAC-UGUC- -5'
33270 3' -60.1 NC_007605.1 + 2069 0.74 0.333237
Target:  5'- gGCCCCGGgucuAGGCCgaGCGCggAGCGUGGguCAGa -3'
miRNA:   3'- -CGGGGCC----UCCGG--UGCG--UCGUACU--GUC- -5'
33270 3' -60.1 NC_007605.1 + 74317 0.73 0.363284
Target:  5'- aGCCacagggggaugCCaGAGGCCGCGUGGCGUGGCu- -3'
miRNA:   3'- -CGG-----------GGcCUCCGGUGCGUCGUACUGuc -5'
33270 3' -60.1 NC_007605.1 + 69713 0.73 0.387022
Target:  5'- cCCCCGGAGGCCAuCGCcccacagagaaAGaggGGCAGg -3'
miRNA:   3'- cGGGGCCUCCGGU-GCG-----------UCguaCUGUC- -5'
33270 3' -60.1 NC_007605.1 + 153912 0.72 0.400094
Target:  5'- cGCCCaggcguccggggaGGGGGCCAgggccUGCAGguUGGCGGg -3'
miRNA:   3'- -CGGGg------------CCUCCGGU-----GCGUCguACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 150332 0.72 0.42022
Target:  5'- aCCCCGGAGGagcCCAUGCAGCAcuaGCGu -3'
miRNA:   3'- cGGGGCCUCC---GGUGCGUCGUac-UGUc -5'
33270 3' -60.1 NC_007605.1 + 52423 0.72 0.437452
Target:  5'- cGCCCCcGAGGCCcuucaGCAGCucUGGCAc -3'
miRNA:   3'- -CGGGGcCUCCGGug---CGUCGu-ACUGUc -5'
33270 3' -60.1 NC_007605.1 + 52240 0.71 0.445338
Target:  5'- gGCCUCGGGGGCgaagCACcggcgugcgaggaGCAGCAUG-CAGg -3'
miRNA:   3'- -CGGGGCCUCCG----GUG-------------CGUCGUACuGUC- -5'
33270 3' -60.1 NC_007605.1 + 154859 0.71 0.446219
Target:  5'- gGCCCCGaGGGGCgCAgGCGGCucGGCAu -3'
miRNA:   3'- -CGGGGC-CUCCG-GUgCGUCGuaCUGUc -5'
33270 3' -60.1 NC_007605.1 + 159915 0.71 0.446219
Target:  5'- gGCuCCCGG-GGCCACGgAGCGgcucuucugcGGCGGg -3'
miRNA:   3'- -CG-GGGCCuCCGGUGCgUCGUa---------CUGUC- -5'
33270 3' -60.1 NC_007605.1 + 129662 0.71 0.482228
Target:  5'- gGCCaaccagCGGAGGuCCACGCAGCcauUGcCAGu -3'
miRNA:   3'- -CGGg-----GCCUCC-GGUGCGUCGu--ACuGUC- -5'
33270 3' -60.1 NC_007605.1 + 162056 0.71 0.49145
Target:  5'- gGCCCUGcaGGGCCGCGUccaGGUcUGGCAGg -3'
miRNA:   3'- -CGGGGCc-UCCGGUGCG---UCGuACUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.