miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33270 3' -60.1 NC_007605.1 + 171608 0.68 0.617006
Target:  5'- cGCCCCccuuGGGGGCUugGCuGGCGcGGcCGGg -3'
miRNA:   3'- -CGGGG----CCUCCGGugCG-UCGUaCU-GUC- -5'
33270 3' -60.1 NC_007605.1 + 171189 0.76 0.248416
Target:  5'- gGCUCCGGGGGCUgcggGCGguGgAUGGCGGc -3'
miRNA:   3'- -CGGGGCCUCCGG----UGCguCgUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 171070 0.68 0.617006
Target:  5'- cGCCCCccuuGGGGGCUugGCuGGCGcGGcCGGg -3'
miRNA:   3'- -CGGGG----CCUCCGGugCG-UCGUaCU-GUC- -5'
33270 3' -60.1 NC_007605.1 + 171043 0.67 0.676348
Target:  5'- cCCCCGGGGGgCAUcgggggguGgGGCAUGGgGGg -3'
miRNA:   3'- cGGGGCCUCCgGUG--------CgUCGUACUgUC- -5'
33270 3' -60.1 NC_007605.1 + 170652 0.69 0.577557
Target:  5'- gGCUCCGG-GGCUgcggGCGguGgAUGGCGGc -3'
miRNA:   3'- -CGGGGCCuCCGG----UGCguCgUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 170548 0.68 0.617006
Target:  5'- cGCCCCccuuGGGGGCUugGCuGGCGcGGcCGGg -3'
miRNA:   3'- -CGGGG----CCUCCGGugCG-UCGUaCU-GUC- -5'
33270 3' -60.1 NC_007605.1 + 170129 0.76 0.248416
Target:  5'- gGCUCCGGGGGCUgcggGCGguGgAUGGCGGc -3'
miRNA:   3'- -CGGGGCCUCCGG----UGCguCgUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 170010 0.68 0.617006
Target:  5'- cGCCCCccuuGGGGGCUugGCuGGCGcGGcCGGg -3'
miRNA:   3'- -CGGGG----CCUCCGGugCG-UCGUaCU-GUC- -5'
33270 3' -60.1 NC_007605.1 + 169983 0.67 0.676348
Target:  5'- cCCCCGGGGGgCAUcgggggguGgGGCAUGGgGGg -3'
miRNA:   3'- cGGGGCCUCCgGUG--------CgUCGUACUgUC- -5'
33270 3' -60.1 NC_007605.1 + 169592 0.76 0.248416
Target:  5'- gGCUCCGGGGGCUgcggGCGguGgAUGGCGGc -3'
miRNA:   3'- -CGGGGCCUCCGG----UGCguCgUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 163265 0.7 0.548331
Target:  5'- gGUCUCGugcGAGGCCuC-CAGCAUGGCGGg -3'
miRNA:   3'- -CGGGGC---CUCCGGuGcGUCGUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 163018 0.66 0.734455
Target:  5'- aCCCCGGugccGGagaCGgGCAGCuacGUGGCGGg -3'
miRNA:   3'- cGGGGCCu---CCg--GUgCGUCG---UACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 162672 0.67 0.705664
Target:  5'- gGCCCCGagaucacauaGGGGUCccuccgcuGCGUGGaCAUGACGGg -3'
miRNA:   3'- -CGGGGC----------CUCCGG--------UGCGUC-GUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 162300 0.69 0.558027
Target:  5'- gGCCaaGGAGGCCAaggUGguGCAUGGgGa -3'
miRNA:   3'- -CGGggCCUCCGGU---GCguCGUACUgUc -5'
33270 3' -60.1 NC_007605.1 + 162056 0.71 0.49145
Target:  5'- gGCCCUGcaGGGCCGCGUccaGGUcUGGCAGg -3'
miRNA:   3'- -CGGGGCc-UCCGGUGCG---UCGuACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 161474 0.68 0.63682
Target:  5'- cCCCCGGggcuGGGCUGCGCaAGCAgGcCGGg -3'
miRNA:   3'- cGGGGCC----UCCGGUGCG-UCGUaCuGUC- -5'
33270 3' -60.1 NC_007605.1 + 161385 0.68 0.646726
Target:  5'- cCCCCGuguacuuguuGAuGGUCACugGCAGCGUGACAa -3'
miRNA:   3'- cGGGGC----------CU-CCGGUG--CGUCGUACUGUc -5'
33270 3' -60.1 NC_007605.1 + 161293 0.77 0.205635
Target:  5'- aGCCCCGGGGGCC-UGCAGCAg----- -3'
miRNA:   3'- -CGGGGCCUCCGGuGCGUCGUacuguc -5'
33270 3' -60.1 NC_007605.1 + 160995 0.67 0.676348
Target:  5'- gGCUCCGGGGGCagACGCaAGCGccgucUGGCc- -3'
miRNA:   3'- -CGGGGCCUCCGg-UGCG-UCGU-----ACUGuc -5'
33270 3' -60.1 NC_007605.1 + 160115 0.69 0.567771
Target:  5'- cCCCCGGAGGUgGCGgAGCucu-CGGa -3'
miRNA:   3'- cGGGGCCUCCGgUGCgUCGuacuGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.