Results 1 - 20 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 169645 | 0.66 | 0.973869 |
Target: 5'- gGUCGGGggGCgccgccggGcgCAGCCAuGCg -3' miRNA: 3'- gCGGCCCuaCGauua----CaaGUCGGU-CG- -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 166243 | 0.68 | 0.940306 |
Target: 5'- uCGgUGGGGUGggGGUGUUCccagaagAGCCAGa -3' miRNA: 3'- -GCgGCCCUACgaUUACAAG-------UCGGUCg -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 160917 | 0.67 | 0.961429 |
Target: 5'- uGUCGGGGcUGCUGGcggcggcGUaCAGCCAGg -3' miRNA: 3'- gCGGCCCU-ACGAUUa------CAaGUCGGUCg -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 159495 | 0.66 | 0.964863 |
Target: 5'- gGCCGGGcu-CUcGUGcccCAGCCGGCc -3' miRNA: 3'- gCGGCCCuacGAuUACaa-GUCGGUCG- -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 159034 | 0.66 | 0.973327 |
Target: 5'- gCGCCGGGcgGacgcgg-UCAGCCccGGCc -3' miRNA: 3'- -GCGGCCCuaCgauuacaAGUCGG--UCG- -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 154828 | 0.69 | 0.90799 |
Target: 5'- gGCCGGuGAUGCggaccuUGGUGUU-GGCCcGCa -3' miRNA: 3'- gCGGCC-CUACG------AUUACAAgUCGGuCG- -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 154493 | 0.68 | 0.930834 |
Target: 5'- aCGCCGGGAgaagaGCaca-GgcUAGCCGGCc -3' miRNA: 3'- -GCGGCCCUa----CGauuaCaaGUCGGUCG- -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 150124 | 0.69 | 0.914069 |
Target: 5'- gCGCCGGGAcGCUAGUGcu--GCaugGGCu -3' miRNA: 3'- -GCGGCCCUaCGAUUACaaguCGg--UCG- -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 148560 | 0.68 | 0.919903 |
Target: 5'- uCGCCcucugGGGAUGa-GAUGUUCagggguGGCCGGUa -3' miRNA: 3'- -GCGG-----CCCUACgaUUACAAG------UCGGUCG- -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 148422 | 0.68 | 0.925492 |
Target: 5'- uGCCaGGGAcgGCUGacgauGUGUUUAGUCuGCc -3' miRNA: 3'- gCGG-CCCUa-CGAU-----UACAAGUCGGuCG- -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 144089 | 0.66 | 0.978857 |
Target: 5'- -cCCGGGGUGCUGggGUgggggaUgGGCUcaGGCa -3' miRNA: 3'- gcGGCCCUACGAUuaCA------AgUCGG--UCG- -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 143432 | 0.66 | 0.969303 |
Target: 5'- aCGCUcggGGGGUGCacaccuccCAGCCGGCc -3' miRNA: 3'- -GCGG---CCCUACGauuacaa-GUCGGUCG- -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 136871 | 0.66 | 0.964863 |
Target: 5'- gCGCCGGGAgacGCUGuccuaCGGCCAc- -3' miRNA: 3'- -GCGGCCCUa--CGAUuacaaGUCGGUcg -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 127282 | 0.69 | 0.895106 |
Target: 5'- uGCCGuGAUGCUcaAGUGUaagCAGCCcggGGCc -3' miRNA: 3'- gCGGCcCUACGA--UUACAa--GUCGG---UCG- -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 120101 | 0.68 | 0.935431 |
Target: 5'- aGCCGGGAggaagaugGCgUGguccacgagcggcGUGUcUUGGCCAGCg -3' miRNA: 3'- gCGGCCCUa-------CG-AU-------------UACA-AGUCGGUCG- -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 116800 | 0.68 | 0.94078 |
Target: 5'- gGCCGGGGUGg-AAUG-UCAGaCCaaGGCc -3' miRNA: 3'- gCGGCCCUACgaUUACaAGUC-GG--UCG- -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 116168 | 0.66 | 0.978857 |
Target: 5'- gGCCGGGAUGUga------GGCCucAGCg -3' miRNA: 3'- gCGGCCCUACGauuacaagUCGG--UCG- -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 111009 | 0.66 | 0.967136 |
Target: 5'- gGCCGaGGAUGggcaggacaaggccCUGGUGgacuaccugUCGGCCuGCa -3' miRNA: 3'- gCGGC-CCUAC--------------GAUUACa--------AGUCGGuCG- -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 99806 | 0.66 | 0.971077 |
Target: 5'- aGCCuGGGcAUGC--GUGaaCuGCCAGCg -3' miRNA: 3'- gCGG-CCC-UACGauUACaaGuCGGUCG- -5' |
|||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 96571 | 0.66 | 0.971077 |
Target: 5'- gGCCGGGGUcgaggaGgUAGUGga-GGCCGGg -3' miRNA: 3'- gCGGCCCUA------CgAUUACaagUCGGUCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home