miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33270 5' -53.3 NC_007605.1 + 2391 0.68 0.930834
Target:  5'- gGCaGGGcUGCUGGUGgcagaCAGCUGGCc -3'
miRNA:   3'- gCGgCCCuACGAUUACaa---GUCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 2793 0.76 0.551527
Target:  5'- gGCCGGGGUGCUGGcgucucauaaacagcUGUgggCAGUUGGCc -3'
miRNA:   3'- gCGGCCCUACGAUU---------------ACAa--GUCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 5460 1.13 0.00312
Target:  5'- uCGCCGGGAUGCUAAUGUUCAGCCAGCg -3'
miRNA:   3'- -GCGGCCCUACGAUUACAAGUCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 10700 0.68 0.94078
Target:  5'- aGCCGGGcggcucgGCUAAggaGggCGGCCuuGCg -3'
miRNA:   3'- gCGGCCCua-----CGAUUa--CaaGUCGGu-CG- -5'
33270 5' -53.3 NC_007605.1 + 14830 0.68 0.935929
Target:  5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3'
miRNA:   3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5'
33270 5' -53.3 NC_007605.1 + 17899 0.68 0.935929
Target:  5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3'
miRNA:   3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5'
33270 5' -53.3 NC_007605.1 + 20968 0.68 0.935929
Target:  5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3'
miRNA:   3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5'
33270 5' -53.3 NC_007605.1 + 24037 0.68 0.935929
Target:  5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3'
miRNA:   3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5'
33270 5' -53.3 NC_007605.1 + 27106 0.68 0.935929
Target:  5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3'
miRNA:   3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5'
33270 5' -53.3 NC_007605.1 + 30174 0.68 0.935929
Target:  5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3'
miRNA:   3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5'
33270 5' -53.3 NC_007605.1 + 33243 0.68 0.935929
Target:  5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3'
miRNA:   3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5'
33270 5' -53.3 NC_007605.1 + 38269 0.69 0.913472
Target:  5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3'
miRNA:   3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 38394 0.69 0.913472
Target:  5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3'
miRNA:   3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 38519 0.69 0.913472
Target:  5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3'
miRNA:   3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 38644 0.69 0.913472
Target:  5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3'
miRNA:   3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 38769 0.69 0.913472
Target:  5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3'
miRNA:   3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 38894 0.68 0.919331
Target:  5'- aGCCGGGGUuccuggcGCUccggGggCAGCgGGCg -3'
miRNA:   3'- gCGGCCCUA-------CGAuua-CaaGUCGgUCG- -5'
33270 5' -53.3 NC_007605.1 + 39018 0.69 0.913472
Target:  5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3'
miRNA:   3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 39143 0.69 0.913472
Target:  5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3'
miRNA:   3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 39268 0.69 0.913472
Target:  5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3'
miRNA:   3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.