Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 39393 | 0.69 | 0.913472 |
Target: 5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3' miRNA: 3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 39518 | 0.69 | 0.913472 |
Target: 5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3' miRNA: 3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 39643 | 0.69 | 0.913472 |
Target: 5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3' miRNA: 3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 40491 | 0.7 | 0.874017 |
Target: 5'- cCGCCGGGcccCUGGUGgcUCGGCC-GCg -3' miRNA: 3'- -GCGGCCCuacGAUUACa-AGUCGGuCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 40617 | 0.66 | 0.969303 |
Target: 5'- aCGCUcggGGGGUGCacaccuccCAGCCGGCc -3' miRNA: 3'- -GCGG---CCCUACGauuacaa-GUCGGUCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 41273 | 0.66 | 0.978857 |
Target: 5'- -cCCGGGGUGCUGggGUgggggaUgGGCUcaGGCa -3' miRNA: 3'- gcGGCCCUACGAUuaCA------AgUCGG--UCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 48486 | 0.68 | 0.94078 |
Target: 5'- aGCCGGGAUGUUuucGUGgcgaucguaAGCC-GCa -3' miRNA: 3'- gCGGCCCUACGAu--UACaag------UCGGuCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 49030 | 0.67 | 0.957769 |
Target: 5'- gGCCGccagcccgagcGGgcGCUcGGUGgcUCAGCCAGCc -3' miRNA: 3'- gCGGC-----------CCuaCGA-UUACa-AGUCGGUCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 49381 | 0.67 | 0.953877 |
Target: 5'- aGCCuccccuggaGGGuggGCU--UGggCAGCCGGCg -3' miRNA: 3'- gCGG---------CCCua-CGAuuACaaGUCGGUCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 53688 | 0.72 | 0.780922 |
Target: 5'- aGCCGcaGcgGCUAG-GUUCAGCCAGg -3' miRNA: 3'- gCGGCc-CuaCGAUUaCAAGUCGGUCg -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 55656 | 0.68 | 0.919903 |
Target: 5'- uGaCgGGGAUGgUGAgggccgcgGUgUCGGCCAGCg -3' miRNA: 3'- gC-GgCCCUACgAUUa-------CA-AGUCGGUCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 56542 | 0.67 | 0.957769 |
Target: 5'- aGCUGGGG----AAU-UUCAGCCAGCa -3' miRNA: 3'- gCGGCCCUacgaUUAcAAGUCGGUCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 57374 | 0.69 | 0.888308 |
Target: 5'- aGCCGGGGUaGCUGAUGgcaggGGCUgcuGCu -3' miRNA: 3'- gCGGCCCUA-CGAUUACaag--UCGGu--CG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 57476 | 0.71 | 0.808449 |
Target: 5'- aGCCGGGGcgGCUGAUGgcgUgGGCUgcuGCu -3' miRNA: 3'- gCGGCCCUa-CGAUUACa--AgUCGGu--CG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 61943 | 0.66 | 0.972777 |
Target: 5'- aGCCGGGcgGCgucaaa--GGCCAGg -3' miRNA: 3'- gCGGCCCuaCGauuacaagUCGGUCg -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 62009 | 0.66 | 0.971077 |
Target: 5'- gGCCGGGAUgGCggcagaGAUGga-GGCCcuGGCc -3' miRNA: 3'- gCGGCCCUA-CGa-----UUACaagUCGG--UCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 62341 | 0.69 | 0.894437 |
Target: 5'- gGCCGuGGA-GCUGGUGgagCAcagugggggcgggGCCGGCg -3' miRNA: 3'- gCGGC-CCUaCGAUUACaa-GU-------------CGGUCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 63095 | 0.69 | 0.895106 |
Target: 5'- uCGCCGGGGgugGC-AGUGgaggggggagcUUCAGCUGGUc -3' miRNA: 3'- -GCGGCCCUa--CGaUUAC-----------AAGUCGGUCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 63632 | 0.71 | 0.825991 |
Target: 5'- uCGUCGGGggGCUGGgccugCAGCCGuGCc -3' miRNA: 3'- -GCGGCCCuaCGAUUacaa-GUCGGU-CG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 64582 | 0.69 | 0.90799 |
Target: 5'- uGCCGGGGUGgaAAacuccacUCuGGCCAGCu -3' miRNA: 3'- gCGGCCCUACgaUUaca----AG-UCGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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