miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33270 5' -53.3 NC_007605.1 + 5460 1.13 0.00312
Target:  5'- uCGCCGGGAUGCUAAUGUUCAGCCAGCg -3'
miRNA:   3'- -GCGGCCCUACGAUUACAAGUCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 49381 0.67 0.953877
Target:  5'- aGCCuccccuggaGGGuggGCU--UGggCAGCCGGCg -3'
miRNA:   3'- gCGG---------CCCua-CGAuuACaaGUCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 160917 0.67 0.961429
Target:  5'- uGUCGGGGcUGCUGGcggcggcGUaCAGCCAGg -3'
miRNA:   3'- gCGGCCCU-ACGAUUa------CAaGUCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 41273 0.66 0.978857
Target:  5'- -cCCGGGGUGCUGggGUgggggaUgGGCUcaGGCa -3'
miRNA:   3'- gcGGCCCUACGAUuaCA------AgUCGG--UCG- -5'
33270 5' -53.3 NC_007605.1 + 62341 0.69 0.894437
Target:  5'- gGCCGuGGA-GCUGGUGgagCAcagugggggcgggGCCGGCg -3'
miRNA:   3'- gCGGC-CCUaCGAUUACaa-GU-------------CGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 65461 0.68 0.930834
Target:  5'- aGCgCGGGAgGCaGAUGUU-GGCCAGa -3'
miRNA:   3'- gCG-GCCCUaCGaUUACAAgUCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 120101 0.68 0.935431
Target:  5'- aGCCGGGAggaagaugGCgUGguccacgagcggcGUGUcUUGGCCAGCg -3'
miRNA:   3'- gCGGCCCUa-------CG-AU-------------UACA-AGUCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 33243 0.68 0.935929
Target:  5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3'
miRNA:   3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5'
33270 5' -53.3 NC_007605.1 + 24037 0.68 0.935929
Target:  5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3'
miRNA:   3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5'
33270 5' -53.3 NC_007605.1 + 116800 0.68 0.94078
Target:  5'- gGCCGGGGUGg-AAUG-UCAGaCCaaGGCc -3'
miRNA:   3'- gCGGCCCUACgaUUACaAGUC-GG--UCG- -5'
33270 5' -53.3 NC_007605.1 + 17899 0.68 0.935929
Target:  5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3'
miRNA:   3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5'
33270 5' -53.3 NC_007605.1 + 27106 0.68 0.935929
Target:  5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3'
miRNA:   3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5'
33270 5' -53.3 NC_007605.1 + 2793 0.76 0.551527
Target:  5'- gGCCGGGGUGCUGGcgucucauaaacagcUGUgggCAGUUGGCc -3'
miRNA:   3'- gCGGCCCUACGAUU---------------ACAa--GUCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 14830 0.68 0.935929
Target:  5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3'
miRNA:   3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5'
33270 5' -53.3 NC_007605.1 + 75725 0.73 0.691951
Target:  5'- gCGCCGGGGUGg-GGUGgacgUCAGCCuGa -3'
miRNA:   3'- -GCGGCCCUACgaUUACa---AGUCGGuCg -5'
33270 5' -53.3 NC_007605.1 + 30174 0.68 0.935929
Target:  5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3'
miRNA:   3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5'
33270 5' -53.3 NC_007605.1 + 166243 0.68 0.940306
Target:  5'- uCGgUGGGGUGggGGUGUUCccagaagAGCCAGa -3'
miRNA:   3'- -GCgGCCCUACgaUUACAAG-------UCGGUCg -5'
33270 5' -53.3 NC_007605.1 + 49030 0.67 0.957769
Target:  5'- gGCCGccagcccgagcGGgcGCUcGGUGgcUCAGCCAGCc -3'
miRNA:   3'- gCGGC-----------CCuaCGA-UUACa-AGUCGGUCG- -5'
33270 5' -53.3 NC_007605.1 + 40491 0.7 0.874017
Target:  5'- cCGCCGGGcccCUGGUGgcUCGGCC-GCg -3'
miRNA:   3'- -GCGGCCCuacGAUUACa-AGUCGGuCG- -5'
33270 5' -53.3 NC_007605.1 + 154493 0.68 0.930834
Target:  5'- aCGCCGGGAgaagaGCaca-GgcUAGCCGGCc -3'
miRNA:   3'- -GCGGCCCUa----CGauuaCaaGUCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.