Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 38894 | 0.68 | 0.919331 |
Target: 5'- aGCCGGGGUuccuggcGCUccggGggCAGCgGGCg -3' miRNA: 3'- gCGGCCCUA-------CGAuua-CaaGUCGgUCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 150124 | 0.69 | 0.914069 |
Target: 5'- gCGCCGGGAcGCUAGUGcu--GCaugGGCu -3' miRNA: 3'- -GCGGCCCUaCGAUUACaaguCGg--UCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 38644 | 0.69 | 0.913472 |
Target: 5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3' miRNA: 3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 38519 | 0.69 | 0.913472 |
Target: 5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3' miRNA: 3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 38394 | 0.69 | 0.913472 |
Target: 5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3' miRNA: 3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 38769 | 0.69 | 0.913472 |
Target: 5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3' miRNA: 3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 38269 | 0.69 | 0.913472 |
Target: 5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3' miRNA: 3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 39018 | 0.69 | 0.913472 |
Target: 5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3' miRNA: 3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 39143 | 0.69 | 0.913472 |
Target: 5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3' miRNA: 3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 39643 | 0.69 | 0.913472 |
Target: 5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3' miRNA: 3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 39518 | 0.69 | 0.913472 |
Target: 5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3' miRNA: 3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 39393 | 0.69 | 0.913472 |
Target: 5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3' miRNA: 3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 39268 | 0.69 | 0.913472 |
Target: 5'- aGCCGGGGUuccuggcGCUccggGggCAGCCGGg -3' miRNA: 3'- gCGGCCCUA-------CGAuua-CaaGUCGGUCg -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 64582 | 0.69 | 0.90799 |
Target: 5'- uGCCGGGGUGgaAAacuccacUCuGGCCAGCu -3' miRNA: 3'- gCGGCCCUACgaUUaca----AG-UCGGUCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 154828 | 0.69 | 0.90799 |
Target: 5'- gGCCGGuGAUGCggaccuUGGUGUU-GGCCcGCa -3' miRNA: 3'- gCGGCC-CUACG------AUUACAAgUCGGuCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 127282 | 0.69 | 0.895106 |
Target: 5'- uGCCGuGAUGCUcaAGUGUaagCAGCCcggGGCc -3' miRNA: 3'- gCGGCcCUACGA--UUACAa--GUCGG---UCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 63095 | 0.69 | 0.895106 |
Target: 5'- uCGCCGGGGgugGC-AGUGgaggggggagcUUCAGCUGGUc -3' miRNA: 3'- -GCGGCCCUa--CGaUUAC-----------AAGUCGGUCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 62341 | 0.69 | 0.894437 |
Target: 5'- gGCCGuGGA-GCUGGUGgagCAcagugggggcgggGCCGGCg -3' miRNA: 3'- gCGGC-CCUaCGAUUACaa-GU-------------CGGUCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 57374 | 0.69 | 0.888308 |
Target: 5'- aGCCGGGGUaGCUGAUGgcaggGGCUgcuGCu -3' miRNA: 3'- gCGGCCCUA-CGAUUACaag--UCGGu--CG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 40491 | 0.7 | 0.874017 |
Target: 5'- cCGCCGGGcccCUGGUGgcUCGGCC-GCg -3' miRNA: 3'- -GCGGCCCuacGAUUACa-AGUCGGuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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