Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33270 | 5' | -53.3 | NC_007605.1 | + | 49381 | 0.67 | 0.953877 |
Target: 5'- aGCCuccccuggaGGGuggGCU--UGggCAGCCGGCg -3' miRNA: 3'- gCGG---------CCCua-CGAuuACaaGUCGGUCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 116800 | 0.68 | 0.94078 |
Target: 5'- gGCCGGGGUGg-AAUG-UCAGaCCaaGGCc -3' miRNA: 3'- gCGGCCCUACgaUUACaAGUC-GG--UCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 48486 | 0.68 | 0.94078 |
Target: 5'- aGCCGGGAUGUUuucGUGgcgaucguaAGCC-GCa -3' miRNA: 3'- gCGGCCCUACGAu--UACaag------UCGGuCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 10700 | 0.68 | 0.94078 |
Target: 5'- aGCCGGGcggcucgGCUAAggaGggCGGCCuuGCg -3' miRNA: 3'- gCGGCCCua-----CGAUUa--CaaGUCGGu-CG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 166243 | 0.68 | 0.940306 |
Target: 5'- uCGgUGGGGUGggGGUGUUCccagaagAGCCAGa -3' miRNA: 3'- -GCgGCCCUACgaUUACAAG-------UCGGUCg -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 14830 | 0.68 | 0.935929 |
Target: 5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3' miRNA: 3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 30174 | 0.68 | 0.935929 |
Target: 5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3' miRNA: 3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 20968 | 0.68 | 0.935929 |
Target: 5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3' miRNA: 3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 24037 | 0.68 | 0.935929 |
Target: 5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3' miRNA: 3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 33243 | 0.68 | 0.935929 |
Target: 5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3' miRNA: 3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 17899 | 0.68 | 0.935929 |
Target: 5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3' miRNA: 3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 27106 | 0.68 | 0.935929 |
Target: 5'- uGCCuGGGUGUgguggAGUGUUgGGCUuAGCa -3' miRNA: 3'- gCGGcCCUACGa----UUACAAgUCGG-UCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 120101 | 0.68 | 0.935431 |
Target: 5'- aGCCGGGAggaagaugGCgUGguccacgagcggcGUGUcUUGGCCAGCg -3' miRNA: 3'- gCGGCCCUa-------CG-AU-------------UACA-AGUCGGUCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 2391 | 0.68 | 0.930834 |
Target: 5'- gGCaGGGcUGCUGGUGgcagaCAGCUGGCc -3' miRNA: 3'- gCGgCCCuACGAUUACaa---GUCGGUCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 154493 | 0.68 | 0.930834 |
Target: 5'- aCGCCGGGAgaagaGCaca-GgcUAGCCGGCc -3' miRNA: 3'- -GCGGCCCUa----CGauuaCaaGUCGGUCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 65461 | 0.68 | 0.930834 |
Target: 5'- aGCgCGGGAgGCaGAUGUU-GGCCAGa -3' miRNA: 3'- gCG-GCCCUaCGaUUACAAgUCGGUCg -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 78325 | 0.68 | 0.930834 |
Target: 5'- -aCCGGuGAUGCgccUGAcGUUguGCCGGCu -3' miRNA: 3'- gcGGCC-CUACG---AUUaCAAguCGGUCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 148422 | 0.68 | 0.925492 |
Target: 5'- uGCCaGGGAcgGCUGacgauGUGUUUAGUCuGCc -3' miRNA: 3'- gCGG-CCCUa-CGAU-----UACAAGUCGGuCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 55656 | 0.68 | 0.919903 |
Target: 5'- uGaCgGGGAUGgUGAgggccgcgGUgUCGGCCAGCg -3' miRNA: 3'- gC-GgCCCUACgAUUa-------CA-AGUCGGUCG- -5' |
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33270 | 5' | -53.3 | NC_007605.1 | + | 148560 | 0.68 | 0.919903 |
Target: 5'- uCGCCcucugGGGAUGa-GAUGUUCagggguGGCCGGUa -3' miRNA: 3'- -GCGG-----CCCUACgaUUACAAG------UCGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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